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DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per million?
deseq2 rlog vst written 7 weeks ago by juheon.maeng • 0 • updated 7 weeks ago by Michael Love ♦ 26k
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Cannot generate a DEseq2DataSet from my data - DESeqDataSetFromMatrix returns error
deseq2 rlog written 4 months ago by mschmidt • 0 • updated 4 months ago by Michael Love ♦ 26k
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Normalisation upstream rlog
deseq2 rlog written 8 months ago by zhang.jianhai • 0 • updated 8 months ago by Michael Love ♦ 26k
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rlog not found
rlog rlog transformation written 19 months ago by crowsreign42 • 0
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rlog transformation producing outliers with very high log-transformed counts
deseq2 rlog written 22 months ago by Frederik Ziebell • 0
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DESeq possible when only rlog table available? (DESeq2 package)
deseq deseq2 rlog written 2.0 years ago by sreibe • 0
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Different PCA plots using rlog and vsd on the same data set
deseq2 pca rlog variancestabilizingtransformation plotpca written 2.2 years ago by lirongrossmann • 40
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lfcshrink and rlog take forever to compute with a DESeqDataSet with many genotypes and conditions
deseq2 rlog lfcshrink written 2.3 years ago by pecot • 0
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DESeq2: Difference in rlog and vst values if run transform before or after running DESeq
deseq deseq2 rlog variancestabilizingtransformation written 2.8 years ago by Zach Roe • 10 • updated 2.8 years ago by Michael Love ♦ 26k
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regularized log transformation- loss of zero values for sparsely expressed genes
deseq2 rlog variancestabilizingtransformation rlog transformation vst written 3.4 years ago by longwoodSequencer • 0 • updated 3.4 years ago by Michael Love ♦ 26k
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What does DESeq2 rlog() return exactly?
deseq2 rlog rlog transformation written 3.8 years ago by lanhuong • 20
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Large differences in sample clustering using cummeRbund (csDendro) and rlog-distance (DESeq2)
clustering cummerbund deseq2 fpkm rlog written 3.9 years ago by Jon Bråte • 160
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Validity of using rlog transformed counts (rld) to obtain a list of expressed genes
deseq2 rlog written 4.2 years ago by sjmonkley • 20 • updated 4.2 years ago by Michael Love ♦ 26k
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Dependence of rlog transformed value range on number of samples
deseq2 rlog written 4.6 years ago by snsansom • 20 • updated 4.6 years ago by Michael Love ♦ 26k
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Warning in lfproc when using rlog or varianceStabilisingTransformation from DESeq2
deseq2 rlog variancestabilizingtransformation lfproc written 4.7 years ago by katja • 0 • updated 4.7 years ago by Michael Love ♦ 26k
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