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0
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155
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0
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rlog not found
rlog rlog transformation written 10 weeks ago by crowsreign42 • 0
0
votes
1
answer
224
views
1
answer
rlog transformation producing outliers with very high log-transformed counts
deseq2 rlog written 5 months ago by Frederik Ziebell • 0
1
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2
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162
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2
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DESeq possible when only rlog table available? (DESeq2 package)
deseq deseq2 rlog written 7 months ago by sreibe • 0
0
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2
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308
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2
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Different PCA plots using rlog and vsd on the same data set
deseq2 pca rlog variancestabilizingtransformation plotpca written 9 months ago by lirongrossmann • 10
0
votes
1
answer
430
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1
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lfcshrink and rlog take forever to compute with a DESeqDataSet with many genotypes and conditions
deseq2 rlog lfcshrink written 10 months ago by pecot • 0
1
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1
answer
833
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1
answer
DESeq2: Difference in rlog and vst values if run transform before or after running DESeq
deseq deseq2 rlog variancestabilizingtransformation written 16 months ago by Zach Roe • 10 • updated 16 months ago by Michael Love ♦ 18k
6
votes
1
answer
684
views
1
answer
regularized log transformation- loss of zero values for sparsely expressed genes
deseq2 rlog variancestabilizingtransformation rlog transformation vst written 23 months ago by longwoodSequencer • 0 • updated 23 months ago by Michael Love ♦ 18k
0
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2
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1.4k
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2
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What does DESeq2 rlog() return exactly?
deseq2 rlog rlog transformation written 2.4 years ago by lanhuong • 0
3
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3
answers
758
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3
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Large differences in sample clustering using cummeRbund (csDendro) and rlog-distance (DESeq2)
clustering cummerbund deseq2 fpkm rlog written 2.5 years ago by Jon Bråte • 150
2
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1
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1.2k
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1
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Validity of using rlog transformed counts (rld) to obtain a list of expressed genes
deseq2 rlog written 2.8 years ago by sjmonkley • 20 • updated 2.8 years ago by Michael Love ♦ 18k
4
votes
1
answer
918
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1
answer
Dependence of rlog transformed value range on number of samples
deseq2 rlog written 3.2 years ago by snsansom • 20 • updated 3.2 years ago by Michael Love ♦ 18k
0
votes
1
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832
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1
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Warning in lfproc when using rlog or varianceStabilisingTransformation from DESeq2
deseq2 rlog variancestabilizingtransformation lfproc written 3.2 years ago by katja • 0 • updated 3.2 years ago by Michael Love ♦ 18k
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