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answers
207
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0
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rlog not found
rlog rlog transformation written 5 months ago by crowsreign42 • 0
0
votes
1
answer
276
views
1
answer
rlog transformation producing outliers with very high log-transformed counts
deseq2 rlog written 8 months ago by Frederik Ziebell • 0
1
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2
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192
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2
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DESeq possible when only rlog table available? (DESeq2 package)
deseq deseq2 rlog written 10 months ago by sreibe • 0
0
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2
answers
382
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2
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Different PCA plots using rlog and vsd on the same data set
deseq2 pca rlog variancestabilizingtransformation plotpca written 12 months ago by lirongrossmann • 10
0
votes
1
answer
492
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1
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lfcshrink and rlog take forever to compute with a DESeqDataSet with many genotypes and conditions
deseq2 rlog lfcshrink written 13 months ago by pecot • 0
1
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1
answer
983
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1
answer
DESeq2: Difference in rlog and vst values if run transform before or after running DESeq
deseq deseq2 rlog variancestabilizingtransformation written 19 months ago by Zach Roe • 10 • updated 19 months ago by Michael Love ♦ 19k
6
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1
answer
823
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1
answer
regularized log transformation- loss of zero values for sparsely expressed genes
deseq2 rlog variancestabilizingtransformation rlog transformation vst written 2.2 years ago by longwoodSequencer • 0 • updated 2.2 years ago by Michael Love ♦ 19k
0
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2
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1.8k
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2
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What does DESeq2 rlog() return exactly?
deseq2 rlog rlog transformation written 2.6 years ago by lanhuong • 0
3
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3
answers
804
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3
answers
Large differences in sample clustering using cummeRbund (csDendro) and rlog-distance (DESeq2)
clustering cummerbund deseq2 fpkm rlog written 2.7 years ago by Jon Bråte • 150
2
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1
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1.3k
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1
answer
Validity of using rlog transformed counts (rld) to obtain a list of expressed genes
deseq2 rlog written 3.0 years ago by sjmonkley • 20 • updated 3.0 years ago by Michael Love ♦ 19k
4
votes
1
answer
971
views
1
answer
Dependence of rlog transformed value range on number of samples
deseq2 rlog written 3.4 years ago by snsansom • 20 • updated 3.4 years ago by Michael Love ♦ 19k
0
votes
1
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893
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1
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Warning in lfproc when using rlog or varianceStabilisingTransformation from DESeq2
deseq2 rlog variancestabilizingtransformation lfproc written 3.5 years ago by katja • 0 • updated 3.5 years ago by Michael Love ♦ 19k
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