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Comment: The correlation between normalized counts and TPM based on 2-factor analysis by
by
Michael Love
32k
Could you post your code where you make these plots?
Answer: DESeq2 coefficient names
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Michael Love
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Looks strange. And Subject is a simple factor also? What about `class(samples)`?
Answer: Ensemble site connection error
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Kevin Blighe
2.8k
Hi,
The Ensembl servers can become quite overloaded. Please re-try the command —possibly a few times, even more than 10— and it should eve…
Answer: The correlation between normalized counts and TPM based on 2-factor analysis by
by
dpryan79
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How did you compute TPMs? In what ways were the results vastly different? That TPMs and normalized counts don't fully correlate isn't surpr…
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