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0
votes
1
answer
166
views
1
answer
rlog transformation producing outliers with very high log-transformed counts
deseq2 rlog written 12 weeks ago by Frederik Ziebell • 0
1
vote
2
answers
129
views
2
answers
DESeq possible when only rlog table available? (DESeq2 package)
deseq deseq2 rlog written 4 months ago by sreibe • 0
0
votes
2
answers
255
views
2
answers
Different PCA plots using rlog and vsd on the same data set
deseq2 pca rlog variancestabilizingtransformation plotpca written 6 months ago by lirongrossmann • 10
0
votes
1
answer
386
views
1
answer
lfcshrink and rlog take forever to compute with a DESeqDataSet with many genotypes and conditions
deseq2 rlog lfcshrink written 7 months ago by pecot • 0
1
vote
1
answer
660
views
1
answer
DESeq2: Difference in rlog and vst values if run transform before or after running DESeq
deseq deseq2 rlog variancestabilizingtransformation written 14 months ago by Zach Roe • 10 • updated 14 months ago by Michael Love ♦ 17k
6
votes
1
answer
561
views
1
answer
regularized log transformation- loss of zero values for sparsely expressed genes
deseq2 rlog variancestabilizingtransformation rlog transformation vst written 20 months ago by longwoodSequencer • 0 • updated 20 months ago by Michael Love ♦ 17k
0
votes
2
answers
1.1k
views
2
answers
What does DESeq2 rlog() return exactly?
deseq2 rlog rlog transformation written 2.1 years ago by lanhuong • 0
3
votes
3
answers
684
views
3
answers
Large differences in sample clustering using cummeRbund (csDendro) and rlog-distance (DESeq2)
clustering cummerbund deseq2 fpkm rlog written 2.3 years ago by Jon Bråte • 140
2
votes
1
answer
1.1k
views
1
answer
Validity of using rlog transformed counts (rld) to obtain a list of expressed genes
deseq2 rlog written 2.6 years ago by sjmonkley • 20 • updated 2.6 years ago by Michael Love ♦ 17k
4
votes
1
answer
850
views
1
answer
Dependence of rlog transformed value range on number of samples
deseq2 rlog written 2.9 years ago by snsansom • 20 • updated 2.9 years ago by Michael Love ♦ 17k
0
votes
1
answer
782
views
1
answer
Warning in lfproc when using rlog or varianceStabilisingTransformation from DESeq2
deseq2 rlog variancestabilizingtransformation lfproc written 3.0 years ago by katja • 0 • updated 3.0 years ago by Michael Love ♦ 17k
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