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41
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0
answers
0
votes
1
answer
158
views
1
answer
1
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1
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124
views
1
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RNA-seq Batch Correction
limma edger rna-seq removebatcheffect() written 25 days ago by cvu0 • updated 24 days ago by Aaron Lun18k
3
votes
1
answer
87
views
1
answer
DESeq2 batch effect modeling and matrix not full rank
rnaseq deseq2 rna-seq written 25 days ago by emmak0 • updated 25 days ago by Michael Love16k
6
votes
2
answers
698
views
2
answers
Is Limma's removeBatchEffect() and log2() commutative?
limma rna-seq removebatcheffect() written 22 months ago by Ekarl210 • updated 4 weeks ago by alakatos80
0
votes
1
answer
145
views
1
answer
1
vote
1
answer
128
views
1
answer
0
votes
0
answers
133
views
0
answers
0
votes
1
answer
135
views
1
answer
40
votes
3
answers
1.4k
views
3
answers
2
votes
2
answers
167
views
2
answers
0
votes
1
answer
118
views
1
answer
0
votes
1
answer
150
views
1
answer
2
votes
1
answer
227
views
1
answer
How to use limma to do regularization for Ballgown
limma rna-seq written 3 months ago by zoukai34120850 • updated 3 months ago by Aaron Lun18k
0
votes
1
answer
216
views
1
answer
DESeq2 batch effect with and without interaction model
deseq2 R linear model rna-seq design matrix written 3 months ago by gdagstn0 • updated 3 months ago by Michael Love16k
10
votes
1
answer
235
views
1
answer
0
votes
1
answer
158
views
1
answer
Limma: how to account for twin data (both MZ and DZ twins)?
limma design rna-seq formula twins written 4 months ago by Simone0 • updated 4 months ago by Aaron Lun18k
3
votes
1
answer
197
views
1
answer
0
votes
1
answer
172
views
1
answer
How many genes are appropriate for GO enrichment analysis
go annotate clusterprofiler rna-seq written 4 months ago by Jack0 • updated 4 months ago by k.vitting.seerup20
5
votes
1
answer
170
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 4 months ago by red_bricks20 • updated 4 months ago by Michael Love16k
0
votes
1
answer
126
views
1
answer
differential splicing events and covariates
limma rna-seq alternative splicing written 4 months ago by lirongrossmann0 • updated 4 months ago by Gordon Smyth32k
0
votes
1
answer
163
views
1
answer
How to use RUVSeq in clustering problems?
clustering ruvseq rna-seq written 4 months ago by bioinfo2001420 • updated 4 months ago by davide risso650
1
vote
1
answer
145
views
1
answer
3
votes
1
answer
220
views
1
answer
DESeq2 time series contrasts between timepoints
deseq2 rna-seq written 4 months ago by gtho12340 • updated 4 months ago by Michael Love16k
0
votes
1
answer
221
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 5 months ago by rmf0 • updated 5 months ago by Aaron Lun18k
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