1
vote
1
answer
57
views
1
answer
Filtering Rna-seq counts
rna-seq filtering written 7 days ago by Aurora10 • updated 6 days ago by Gordon Smyth33k
1
vote
1
answer
59
views
1
answer
1
vote
1
answer
56
views
1
answer
Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 8 days ago by mad6kj0 • updated 7 days ago by James W. MacDonald46k
1
vote
1
answer
59
views
1
answer
strange results with featureCounts
featurecounts rna-seq total rna written 8 days ago by inah0 • updated 8 days ago by Gordon Smyth33k
0
votes
1
answer
59
views
1
answer
Analyzing a subgroups of samples, which result should I trust
deseq2 rna-seq written 21 days ago by Raymond0 • updated 21 days ago by funnyjokes1.com0
1
vote
1
answer
118
views
1
answer
2
votes
1
answer
101
views
1
answer
EdgeR: Prior degrees of freedom effect on tag wise dispersion
rnaseq edger R rna-seq written 4 weeks ago by r.beeloo0 • updated 4 weeks ago by Aaron Lun19k
0
votes
0
answers
48
views
0
answers
1
vote
1
answer
69
views
1
answer
3
votes
1
answer
140
views
1
answer
0
votes
1
answer
76
views
1
answer
error: NA counts not permitted
edger systempiper rna-seq written 7 weeks ago by clarisbaby0 • updated 6 weeks ago by Aaron Lun19k
0
votes
0
answers
99
views
0
answers
3
votes
3
answers
1.5k
views
5 follow
3
answers
What does this error mean? - issue implementing SVA
sva rna-seq written 2.3 years ago by kmuench30 • updated 7 weeks ago by Sandip Darji0
2
votes
1
answer
99
views
1
answer
2
votes
1
answer
111
views
1
answer
RNA-seq: Time-course data normalisation with TPM
normalization deseq2 rna-seq tpm written 11 weeks ago by heikki.sarin0 • updated 11 weeks ago by Michael Love17k
0
votes
0
answers
52
views
0
answers
0
votes
1
answer
122
views
1
answer
Best way to analyze multiple treatments using DESeq2?
mirna deseq2 rna-seq written 11 weeks ago by michael.frech0 • updated 11 weeks ago by Michael Love17k
0
votes
1
answer
96
views
1
answer
0
votes
0
answers
71
views
0
answers
0
votes
1
answer
223
views
1
answer
voomWithQualityWeights, design and weights
voom rna-seq limma-voom voomwithqualityweights written 3 months ago by anne.biton0 • updated 3 months ago by Matthew Ritchie730
1
vote
1
answer
170
views
1
answer
RNA-seq Batch Correction
limma edger rna-seq removebatcheffect() written 3 months ago by cvu0 • updated 3 months ago by Aaron Lun19k
3
votes
1
answer
135
views
1
answer
DESeq2 batch effect modeling and matrix not full rank
rnaseq deseq2 rna-seq written 3 months ago by emmak20 • updated 3 months ago by Michael Love17k
6
votes
2
answers
822
views
2
answers
Is Limma's removeBatchEffect() and log2() commutative?
limma rna-seq removebatcheffect() written 2.1 years ago by Ekarl210 • updated 3 months ago by alakatos80
0
votes
1
answer
229
views
1
answer
1
vote
1
answer
200
views
1
answer
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