Showing: rnaseq • reset
Search
3
votes
2
answers
72
views
2
answers
How to determine the cause of no difference between treatments in rnaseq?
rnaseq edger dge written 4 days ago by jdmontenegroc • 0 • updated 3 days ago by Gordon Smyth ♦ 37k
0
votes
0
answers
28
views
0
answers
Incorporating factors of unwanted variation from RUVr into EdgeR cell means model for DE
rnaseq edger ruvseq glm ruvr written 8 days ago by garbuzov • 0
0
votes
1
answer
95
views
1
answer
Plot genes with similar expression patterns
rnaseq deseq2 R written 5 weeks ago by ecg1g15 • 0 • updated 5 weeks ago by Michael Love ♦ 24k
2
votes
1
answer
87
views
1
answer
edgeR and batch effect correction for differential analysis
rnaseq batcheffect limma edger R written 5 weeks ago by madhu93 • 0 • updated 5 weeks ago by James W. MacDonald ♦ 50k
0
votes
1
answer
108
views
1
answer
How to create design matrix for differential analysis within the same cell-line samples?
rnaseq edger R designmatrix differentialanalysis written 6 weeks ago by Beginner • 50 • updated 6 weeks ago by Aaron Lun • 24k
2
votes
1
answer
75
views
1
answer
WGCNA from different lengths RNAseq read
rnaseq network wgcna co-expression written 6 weeks ago by ag1805x • 10 • updated 6 weeks ago by Peter Langfelder • 2.1k
5
votes
1
answer
154
views
1
answer
Improving the performance of the align function from Rsubread for old Roche454 reads
rnaseq rsubread align roche454 written 9 weeks ago by Raito92 • 40 • updated 7 weeks ago by Wei Shi • 3.1k
0
votes
0
answers
103
views
0
answers
Differential gene expression of time series RNAseq expermimnet with one cohort (diseased)
rnaseq timeseries experiment written 8 weeks ago by pbachali • 10 • updated 8 weeks ago by James W. MacDonald ♦ 50k
3
votes
2
answers
133
views
2
answers
Recount data for unannotated genes
rnaseq lncrna gencode gene annotation recount written 12 weeks ago by francesco.gandolfi • 20 • updated 9 weeks ago by chris.wilks • 10
0
votes
0
answers
119
views
0
answers
Job: Data science research assistant position at Johns Hopkins
rnaseq brain job R next-gen sequencing imaging written 9 weeks ago by hjaarop1 • 0
7
votes
2
answers
152
views
2
answers
featureCounts returning a matrix of counts full of 0...
rnaseq rsubread featurecounts written 10 weeks ago by Raito92 • 40 • updated 9 weeks ago by Gordon Smyth ♦ 37k
1
vote
1
answer
114
views
1
answer
How to normalize RNA-seq when 50% genes are DE? (TMM)
rnaseq normalization limma differential expression tmm written 10 weeks ago by natalia_lt • 0 • updated 10 weeks ago by James W. MacDonald ♦ 50k
1
vote
1
answer
151
views
1
answer
GSVA on RNAseq data
rnaseq gsva written 10 weeks ago by Anja Rockstroh • 20 • updated 10 weeks ago by Robert Castelo • 2.3k
1
vote
1
answer
103
views
1
answer
DESeq2 log2FoldChange is very large and differs strongly from manually calculated.
rnaseq deseq2 written 10 weeks ago by Matthias • 0 • updated 10 weeks ago by Michael Love ♦ 24k
1
vote
1
answer
117
views
1
answer
error in aSwitchlist (isoformswitchanalyzeR)
rnaseq salmon tximport isoformswitchanalyzer written 10 weeks ago by saddamhusain77 • 0 • updated 10 weeks ago by k.vitting.seerup • 90
0
votes
0
answers
63
views
0
answers
Paired DE analysis in edgeR with trios of samples while blocking for various confounders
rnaseq edger design matrix paired analysis written 11 weeks ago by svlachavas • 660
0
votes
1
answer
108
views
1
answer
Computationally Singular Matrices - DESeq
rnaseq sva deseq2 written 12 weeks ago by flippy23 • 0 • updated 12 weeks ago by Michael Love ♦ 24k
0
votes
1
answer
103
views
1
answer
Deseq2 polysome profiling analysis
rnaseq deseq2 written 12 weeks ago by irene.diaz • 0 • updated 12 weeks ago by Michael Love ♦ 24k
0
votes
0
answers
72
views
0
answers
TCGAbiolinks specific mutation query
rnaseq tcga tcgabiolinks gdcquery mutation written 3 months ago by Yonatan Amzaleg • 0
0
votes
0
answers
115
views
0
answers
removing confounding batch efffect with RUVg
rnaseq batch effect ruvg written 3 months ago by gtechbio • 0
5
votes
2
answers
223
views
2
answers
Foldchange values Limma
rnaseq limma foldchange written 3 months ago by susana.amaral.teixeira • 10
1
vote
1
answer
92
views
1
answer
Error using Conditional Quartile Normalization (CQN)
rnaseq normalization cqn conditionalquartilenormalization debugging written 3 months ago by garbuzov • 0 • updated 3 months ago by Kasper Daniel Hansen ♦ 6.4k
3
votes
1
answer
200
views
1
answer
DESeq2 log2FC shrink before GSEA or not?
rnaseq deseq2 gsea gene espression written 3 months ago by bmreilly • 0 • updated 3 months ago by Michael Love ♦ 24k
1
vote
0
answers
317
views
0
answers
News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
rnaseq proteomics deseq2 news workshop transcriptomics written 3 months ago by Laurent Gatto ♦ 1.1k
0
votes
1
answer
106
views
1
answer
Deseq2 padjusted values versus pvalue
rnaseq deseq2 padjusted written 4 months ago by tanyabioinfo • 20 • updated 4 months ago by Michael Love ♦ 24k
<prev • 932 results • page 1 of 38 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • Chicago, IL, USA, 7 minutes ago
  • Denali, 8 minutes ago
  • United States, 9 minutes ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 362 users visited in the last hour