Showing: rnaseq • reset
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Pathviews for DE list of genes
rnaseq pathway analysis pathviews written 1 day ago by sofia.lundahl • 0 • updated 1 day ago by Michael Love ♦ 25k
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Combining RSEM Files with dif row # for tximport
rnaseq deseq2 tximport written 12 days ago by venura • 0 • updated 11 days ago by Michael Love ♦ 25k
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Unexpected results while analyzing a subset of genes in GEO RNAseq dataset containing TPM values
rnaseq limma R differential expression tpm written 15 days ago by atakanekiz • 20 • updated 15 days ago by Steve Lianoglou ♦ 12k
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How to normalize RNA-seq data if majority of transcripts expected to be differentially expressed vs control condition?
rnaseq edger written 17 days ago by gdeniz • 0 • updated 17 days ago by Gordon Smyth ♦ 38k
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pvaluecutoff meaning in enrichKEGG
rnaseq kegg written 22 days ago by sportiellomike • 0
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Variation between technical replicates (DESeq2, batch effects)
rnaseq deseq2 differential expression batch effect replicates written 29 days ago by Nik dAK • 10 • updated 25 days ago by Michael Love ♦ 25k
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Differential gene expression anlaysis?
rnaseq normalization R written 4 weeks ago by 1234anjalianjali1234 • 0 • updated 4 weeks ago by Gordon Smyth ♦ 38k
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cpm filtering parameter
rnaseq edger transcriptomics cpm filtering metatranscriptomics written 5 weeks ago by vm.higareda • 0 • updated 5 weeks ago by Gordon Smyth ♦ 38k
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DESeq2 RNAseq differential expression analysis
rnaseq deseq2 written 5 weeks ago by adeler001 • 0 • updated 5 weeks ago by Michael Love ♦ 25k
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DESeq2 unpaired RNAseq analysis
rnaseq deseq2 written 6 weeks ago by adeler001 • 0 • updated 5 weeks ago by Michael Love ♦ 25k
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DESeq2: Normalization of allele specific counts in RNA-seq
rnaseq normalization deseq2 allele-specific written 7 weeks ago by Ankit • 0 • updated 6 weeks ago by Michael Love ♦ 25k
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Removing Batch effect on the raw counts or normalised counts
rnaseq deseq2 batch effect written 7 weeks ago by chudar.chudar • 0 • updated 7 weeks ago by Michael Love ♦ 25k
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RNA-seq normalization without filtering
rnaseq normalization edger deseq2 written 10 weeks ago by Lin • 50 • updated 9 weeks ago by Steve Lianoglou ♦ 12k
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tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute [2] must be the same length as the vector [1]
rnaseq software error R tximport written 10 weeks ago by caranlove • 0 • updated 10 weeks ago by Michael Love ♦ 25k
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Heatmap of selected genes
rnaseq deseq2 heatmap degs written 11 weeks ago by danikadigiacomo • 0 • updated 11 weeks ago by mikhael.manurung • 190
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Contrast vs relevel (DESEq2)
rnaseq deseq2 written 12 weeks ago by Merlin • 10 • updated 12 weeks ago by Michael Love ♦ 25k
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Fisher test in Rna seq
rnaseq R rna-seq written 10 months ago by g.k • 0 • updated 12 weeks ago by Gordon Smyth ♦ 38k
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RNASeq biplot variables and samples
rnaseq deseq2 written 3 months ago by ecg1g15 • 0 • updated 3 months ago by Michael Love ♦ 25k
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deseq2 pre filter rna seq
rnaseq deseq2 written 3 months ago by badribio • 0 • updated 3 months ago by zefrieira • 0
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Best alternative annotation package to BiomaRt
rnaseq biomart R ensembl written 3 months ago by m93 • 10
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DESeq2 compare all_vs_all levels error
rnaseq deseq2 error written 3 months ago by aishu.jp • 10 • updated 3 months ago by swbarnes2 • 330
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Downloading HTSeq raw reads with TCGABiolinks
rnaseq tcgabiolinks written 3 months ago by sherajilir • 0
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Confounded design, batch effect correction (edgeR)
rnaseq edger differential gene expression batch effect written 13 months ago by Laura • 20 • updated 3 months ago by Victoria • 0
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How to determine the cause of no difference between treatments in rnaseq?
rnaseq edger dge written 4 months ago by jdmontenegroc • 0 • updated 4 months ago by Gordon Smyth ♦ 38k
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Incorporating factors of unwanted variation from RUVr into EdgeR cell means model for DE
rnaseq edger ruvseq glm ruvr written 4 months ago by garbuzov • 0
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