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Replies
Answer: unable to forge custom BSgenome after update
by
Hervé Pagès
14k
Hi,
You need to specify the `circ_seqs` field in your seed file.
`forgeBSgenomeDataPkg()` needs to know which sequences are circular …
Comment: How to apply limma-trend or voom to batch corrected single cell data? (non-integ
by
hainct
•
0
Thank you @alun
Comment: EnhancedVolcano plot with colCustom
by
Neeraja Vegesna
▴
10
Hi Kevin,
It worked once I added `names(keyvals.colour1)[keyvals.colour1 == '#8F8F8F'] <- 'NA'`.
![volcanoplot][1]
Thanks a lot for you…
Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza
by
mwong043
•
0
Thanks Rory. I tried the first method by defining a vector containing the normalisation factors for my samples and it worked.
I am just wo…
Comment: EnhancedVolcano plot with colCustom
by
Kevin Blighe
2.8k
Hi, that's great that it works with a lower number of groups. Can you re-check the logic flow when you are using more groups? *EnhancedVolc…
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