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24
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Evaluating Hub genes in WGCNA and role of using Signed network
rnaseq wgcna written 4 days ago by dorothy.jrobbert • 10
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77
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1
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A few up-regulated genes using an extravagant number of reads - effect on DE analysis
rnaseq deseq2 written 14 days ago by Poikilo • 0 • updated 14 days ago by Michael Love ♦ 19k
2
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1
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78
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1
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Adding gene names (or symbols) in my DESeq result
rnaseq deseq2 gene names written 15 days ago by ytlin610 • 10 • updated 15 days ago by Michael Love ♦ 19k
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95
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1
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DESeq2 Normalized Counts for Mfuzz
rnaseq mfuzz deseq2 written 26 days ago by rbenel • 0 • updated 26 days ago by Michael Love ♦ 19k
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64
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1
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single cell RNA-seq pipeline
rnaseq scrna-seq written 4 weeks ago by Bogdan • 490 • updated 4 weeks ago by Aaron Lun • 20k
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2
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86
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2
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Subread FeatureCounts for Exon level quantification: Length estimate for Exons as low as 1 base-pair
rnaseq dexseq featurecounts subread written 5 weeks ago by jennyl.smith12 • 0 • updated 4 weeks ago by Gordon Smyth ♦ 34k
2
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2
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111
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Implementation of specific cpm filtering in RNA-Seq data described in a previously published edgeR pipeline
rnaseq edger non-specific filtering cpm written 5 weeks ago by svlachavas • 610 • updated 5 weeks ago by Gordon Smyth ♦ 34k
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75
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Global expression shift using RUVSeq
rnaseq normalization ruvseq differential expression written 5 weeks ago by Leon • 0 • updated 5 weeks ago by davide risso • 740
3
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2
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92
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2
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DESeq2: possible to compare read counts at single nucleotide level ?
rnaseq deseq2 written 6 weeks ago by bioinfo • 0 • updated 5 weeks ago by Gordon Smyth ♦ 34k
3
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1
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166
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1
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EdgeR for differential analysis between two cell lines without replication
rnaseq edger differential gene expression written 5 weeks ago by Biologist • 70 • updated 5 weeks ago by Gordon Smyth ♦ 34k
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2
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72
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2
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What are the different strategies to filter out low count genes?
rnaseq deseq2 differential gene expression written 5 weeks ago by ag1805x • 0 • updated 5 weeks ago by Wolfgang Huber ♦ 13k
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48
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1
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Using tximport on RSEM abundance date
rnaseq tximport rsem written 5 weeks ago by raeganlynn123 • 0 • updated 5 weeks ago by Michael Love ♦ 19k
2
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1
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72
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1
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Run edgeR or Voom+LIMMA where groups are dynamically reassigned for each gene.
rnaseq limma edger written 5 weeks ago by Ahdee • 40 • updated 5 weeks ago by Gordon Smyth ♦ 34k
3
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2
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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
rnaseq deseq2 written 3.3 years ago by anpham • 0 • updated 6 weeks ago by ta_awwad • 10
1
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1
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105
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1
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Differential analysis based on selection of random samples
rnaseq deseq2 R bioconductor differential gene expression written 6 weeks ago by Beginner • 50 • updated 6 weeks ago by Michael Love ♦ 19k
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73
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covariate vs adjustvars
rnaseq differential gene expression ballgown tuxedo written 7 weeks ago by justinjj • 10
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2
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93
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2
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Understanding Contrasts when analyzing DESeq2 results
rnaseq deseq2 extracting contrasts interaction term written 7 weeks ago by Amit Indap • 10 • updated 6 weeks ago by swbarnes2 • 30
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34
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How to output list of genes which belong to specific GO(Gene Ontology)?
rnaseq gene ontology written 6 weeks ago by karagozeylul • 0
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49
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ASPLI (RNAseq AS) R package error
rnaseq aspli written 6 weeks ago by dina.hesham139 • 0
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64
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How to output list of genes which belong to specific GO(Gene Ontology)?
rnaseq gene ontology written 6 weeks ago by karagozeylul • 0
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1
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62
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1
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Circumventing statistical non-significance on a triple interaction using edgeR
rnaseq edger interactions makecontrasts written 7 weeks ago by David Rengel • 70 • updated 7 weeks ago by Aaron Lun • 20k
2
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1
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124
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1
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The calculation of regularized logarithm
rnaseq deseq2 written 8 weeks ago by Yuya Liang • 0 • updated 8 weeks ago by Michael Love ♦ 19k
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1
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56
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1
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Interactions and contrasts for DE analysis in ballgown
rnaseq R interactions de ballgown written 8 weeks ago by khill33 • 0 • updated 8 weeks ago by James W. MacDonald ♦ 47k
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53
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Job: Postdoctoral position, T follicular helper cell transcriptomics
rnaseq job single cell immunology t cells tfh cells written 8 weeks ago by michela.locci • 0
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Job: Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
sequencing rnaseq smallrna cancer job methylation written 8 weeks ago by Andy Lynch • 100
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