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5
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148
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RNA-seq normalization without filtering
rnaseq normalization edger deseq2 written 12 days ago by Lin • 40 • updated 12 days ago by Steve Lianoglou ♦ 12k
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tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute [2] must be the same length as the vector [1]
rnaseq software error R tximport written 17 days ago by caranlove • 0 • updated 17 days ago by Michael Love ♦ 24k
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Heatmap of selected genes
rnaseq deseq2 heatmap degs written 23 days ago by danikadigiacomo • 0 • updated 23 days ago by mikhael.manurung • 160
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Contrast vs relevel (DESEq2)
rnaseq deseq2 written 4 weeks ago by Merlin • 10 • updated 4 weeks ago by Michael Love ♦ 24k
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Fisher test in Rna seq
rnaseq R rna-seq written 8 months ago by g.k • 0 • updated 4 weeks ago by Gordon Smyth ♦ 38k
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RNASeq biplot variables and samples
rnaseq deseq2 written 4 weeks ago by ecg1g15 • 0 • updated 4 weeks ago by Michael Love ♦ 24k
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deseq2 pre filter rna seq
rnaseq deseq2 written 6 weeks ago by badribio • 0 • updated 6 weeks ago by zefrieira • 0
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Best alternative annotation package to BiomaRt
rnaseq biomart R ensembl written 6 weeks ago by m93 • 10
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DESeq2 compare all_vs_all levels error
rnaseq deseq2 error written 7 weeks ago by aishu.jp • 10 • updated 7 weeks ago by swbarnes2 • 240
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128
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Downloading HTSeq raw reads with TCGABiolinks
rnaseq tcgabiolinks written 8 weeks ago by sherajilir • 0
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Confounded design, batch effect correction (edgeR)
rnaseq edger differential gene expression batch effect written 11 months ago by Laura • 20 • updated 8 weeks ago by Victoria • 0
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How to determine the cause of no difference between treatments in rnaseq?
rnaseq edger dge written 9 weeks ago by jdmontenegroc • 0 • updated 9 weeks ago by Gordon Smyth ♦ 38k
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Incorporating factors of unwanted variation from RUVr into EdgeR cell means model for DE
rnaseq edger ruvseq glm ruvr written 10 weeks ago by garbuzov • 0
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Plot genes with similar expression patterns
rnaseq deseq2 R written 3 months ago by ecg1g15 • 0 • updated 3 months ago by Michael Love ♦ 24k
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edgeR and batch effect correction for differential analysis
rnaseq batcheffect limma edger R written 3 months ago by madhu93 • 0 • updated 3 months ago by James W. MacDonald ♦ 50k
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How to create design matrix for differential analysis within the same cell-line samples?
rnaseq edger R designmatrix differentialanalysis written 3 months ago by Beginner • 50 • updated 3 months ago by Aaron Lun • 24k
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WGCNA from different lengths RNAseq read
rnaseq network wgcna co-expression written 3 months ago by ag1805x • 10 • updated 3 months ago by Peter Langfelder • 2.1k
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Improving the performance of the align function from Rsubread for old Roche454 reads
rnaseq rsubread align roche454 written 4 months ago by Raito92 • 40 • updated 3 months ago by Wei Shi • 3.1k
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Differential gene expression of time series RNAseq expermimnet with one cohort (diseased)
rnaseq timeseries experiment written 3 months ago by pbachali • 10 • updated 3 months ago by James W. MacDonald ♦ 50k
3
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2
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Recount data for unannotated genes
rnaseq lncrna gencode gene annotation recount written 4 months ago by francesco.gandolfi • 20 • updated 4 months ago by chris.wilks • 10
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Job: Data science research assistant position at Johns Hopkins
rnaseq brain job R next-gen sequencing imaging written 4 months ago by hjaarop1 • 0
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featureCounts returning a matrix of counts full of 0...
rnaseq rsubread featurecounts written 4 months ago by Raito92 • 40 • updated 4 months ago by Gordon Smyth ♦ 38k
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How to normalize RNA-seq when 50% genes are DE? (TMM)
rnaseq normalization limma differential expression tmm written 4 months ago by natalia_lt • 0 • updated 4 months ago by James W. MacDonald ♦ 50k
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GSVA on RNAseq data
rnaseq gsva written 4 months ago by Anja Rockstroh • 20 • updated 4 months ago by Robert Castelo • 2.3k
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DESeq2 log2FoldChange is very large and differs strongly from manually calculated.
rnaseq deseq2 written 4 months ago by Matthias • 0 • updated 4 months ago by Michael Love ♦ 24k
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