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Differential gene expression of time series RNAseq expermimnet with one cohort (diseased)
rnaseq timeseries experiment written 1 day ago by pbachali • 10 • updated 1 day ago by James W. MacDonald ♦ 49k
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Improving the performance of the align function from Rsubread for old Roche454 reads
rnaseq rsubread align roche454 written 8 days ago by Raito92 • 40
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Recount data for unannotated genes
rnaseq lncrna gencode gene annotation recount written 4 weeks ago by francesco.gandolfi • 20 • updated 9 days ago by chris.wilks • 10
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Job: Data science research assistant position at Johns Hopkins
rnaseq brain job R next-gen sequencing imaging written 9 days ago by hjaarop1 • 0
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featureCounts returning a matrix of counts full of 0...
rnaseq rsubread featurecounts written 15 days ago by Raito92 • 40 • updated 14 days ago by Gordon Smyth ♦ 37k
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How to normalize RNA-seq when 50% genes are DE? (TMM)
rnaseq normalization limma differential expression tmm written 15 days ago by natalia_lt • 0 • updated 15 days ago by James W. MacDonald ♦ 49k
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GSVA on RNAseq data
rnaseq gsva written 16 days ago by Anja Rockstroh • 20 • updated 15 days ago by Robert Castelo • 2.3k
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DESeq2 log2FoldChange is very large and differs strongly from manually calculated.
rnaseq deseq2 written 16 days ago by Matthias • 0 • updated 16 days ago by Michael Love ♦ 23k
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error in aSwitchlist (isoformswitchanalyzeR)
rnaseq salmon tximport isoformswitchanalyzer written 20 days ago by saddamhusain77 • 0 • updated 20 days ago by k.vitting.seerup • 90
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Paired DE analysis in edgeR with trios of samples while blocking for various confounders
rnaseq edger design matrix paired analysis written 23 days ago by svlachavas • 650
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Computationally Singular Matrices - DESeq
rnaseq sva deseq2 written 4 weeks ago by flippy23 • 0 • updated 29 days ago by Michael Love ♦ 23k
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Deseq2 polysome profiling analysis
rnaseq deseq2 written 4 weeks ago by irene.diaz • 0 • updated 4 weeks ago by Michael Love ♦ 23k
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TCGAbiolinks specific mutation query
rnaseq tcga tcgabiolinks gdcquery mutation written 5 weeks ago by Yonatan Amzaleg • 0
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removing confounding batch efffect with RUVg
rnaseq batch effect ruvg written 5 weeks ago by gtechbio • 0
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Foldchange values Limma
rnaseq limma foldchange written 8 weeks ago by susana.amaral.teixeira • 10
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Error using Conditional Quartile Normalization (CQN)
rnaseq normalization cqn conditionalquartilenormalization debugging written 6 weeks ago by garbuzov • 0 • updated 6 weeks ago by Kasper Daniel Hansen ♦ 6.4k
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DESeq2 log2FC shrink before GSEA or not?
rnaseq deseq2 gsea gene espression written 8 weeks ago by bmreilly • 0 • updated 7 weeks ago by Michael Love ♦ 23k
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News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
rnaseq proteomics deseq2 news workshop transcriptomics written 8 weeks ago by Laurent Gatto ♦ 1.1k
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Deseq2 padjusted values versus pvalue
rnaseq deseq2 padjusted written 9 weeks ago by tanyabioinfo • 20 • updated 9 weeks ago by Michael Love ♦ 23k
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biomart not ound some prevous release
rnaseq biomart written 9 weeks ago by jarod_v6@libero.it • 40 • updated 9 weeks ago by Mike Smith • 3.4k
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edgeR /DESeq2 normalization for differential expression in RNA-seq blood samples
rnaseq normalization edger deseq2 hemoglobin written 9 weeks ago by aec • 40 • updated 9 weeks ago by Ryan C. Thompson ♦ 7.3k
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How do you obtain the R - squared value from the NB line produced in plotMeanVar ?
rnaseq edger R written 10 weeks ago by nickwongga • 0 • updated 10 weeks ago by Gordon Smyth ♦ 37k
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glm.fit problem with maSigPro
rnaseq masigpro software error nueda written 10 weeks ago by lalamig • 0 • updated 10 weeks ago by James W. MacDonald ♦ 49k
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Script for fold change in DESeq for count data with 2 groups
rnaseq deseq2 written 11 weeks ago by marc.osullivan • 0 • updated 11 weeks ago by Michael Love ♦ 23k
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Deseq2 two controls in design experiment
rnaseq deseq2 written 11 weeks ago by tanyabioinfo • 20 • updated 11 weeks ago by Michael Love ♦ 23k
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