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Deseq2 padjusted values versus pvalue
rnaseq deseq2 padjusted written 18 hours ago by tanyabioinfo • 20 • updated 18 hours ago by Michael Love ♦ 22k
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biomart not ound some prevous release
rnaseq biomart written 1 day ago by jarod_v6@libero.it • 40 • updated 1 day ago by Mike Smith • 3.2k
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edgeR /DESeq2 normalization for differential expression in RNA-seq blood samples
rnaseq normalization edger deseq2 hemoglobin written 4 days ago by aec • 40 • updated 4 days ago by Ryan C. Thompson ♦ 7.2k
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How do you obtain the R - squared value from the NB line produced in plotMeanVar ?
rnaseq edger R written 6 days ago by nickwongga • 0 • updated 6 days ago by Gordon Smyth ♦ 36k
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glm.fit problem with maSigPro
rnaseq masigpro software error nueda written 7 days ago by lalamig • 0 • updated 7 days ago by James W. MacDonald ♦ 49k
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Script for fold change in DESeq for count data with 2 groups
rnaseq deseq2 written 12 days ago by marc.osullivan • 0 • updated 12 days ago by Michael Love ♦ 22k
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Deseq2 two controls in design experiment
rnaseq deseq2 written 12 days ago by tanyabioinfo • 20 • updated 12 days ago by Michael Love ♦ 22k
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How to generate a volcano plot when p-values from DESeq2 are zero?
rnaseq visualization deseq2 pvalue enhancedvolcano written 12 days ago by ricardo3889 • 0 • updated 12 days ago by Michael Love ♦ 22k
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Meta-analysis of RNAseq data
rnaseq microarray meta-analysis public data sets written 12 days ago by Vladimir Krasikov • 90 • updated 12 days ago by alexvpickering • 110
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Batch correction for a sets of genes
rnaseq cancer deseq2 R written 26 days ago by jivarajivaraj • 10 • updated 25 days ago by Michael Love ♦ 22k
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Is it allowed to fit two models to make between and within subjects comparisons separately?
rnaseq limma edger deseq2 random effects written 29 days ago by tcalvo • 30
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Different DEG results using Ballgown and edgeR
rnaseq edger batch effect ballgown adjustvars written 29 days ago by IRAIA.MAIALEN • 0 • updated 29 days ago by Gordon Smyth ♦ 36k
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Fisher test in Rna seq
rnaseq R rna-seq written 10 weeks ago by g.k • 0 • updated 5 weeks ago by Bioconductor Community ♦♦ 0
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Aclaration of batch effect adjust in DE analysis
rnaseq edger batch effect written 5 weeks ago by IRAIA.MAIALEN • 0 • updated 5 weeks ago by James W. MacDonald ♦ 49k
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Tumor subtype classification when genes of gene set are missing from samples - GSVA approach
rnaseq gsva tcga geneset subtypes written 6 weeks ago by Pietro • 10
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Data preparation and Machine learning on time course RNAseq data
rnaseq mlseq machine learning deep learning written 6 weeks ago by A • 40
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90
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Uncertain about PCA plot for DESeq2 analysis
rnaseq deseq2 bioconductor pca written 6 weeks ago by pepere • 40 • updated 6 weeks ago by Michael Love ♦ 22k
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FDR does not change between genes in edgeR
rnaseq edger written 7 weeks ago by apfelbapfel • 0 • updated 6 weeks ago by Gordon Smyth ♦ 36k
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64
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Unusual DESeq2 results
rnaseq deseq2 written 6 weeks ago by taamslab • 0 • updated 6 weeks ago by Michael Love ♦ 22k
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170
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how to find expressed genes in RNAseq
rnaseq deseq2 featurecounts differential gene expression rnaseqgene written 8 weeks ago by melkile26 • 0
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How can I compare the expression of two genes within the same sample?
rnaseq deseq2 gene expression written 6 weeks ago by chiara.facciotto • 0 • updated 6 weeks ago by heyao • 30
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RNAseq analysis: what comes first, filtering or normalization
rnaseq edger R written 7 weeks ago by apfelbapfel • 0 • updated 7 weeks ago by Aaron Lun • 22k
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DESeq2 model design for paired samples with multiple factors
rnaseq deseq2 model design written 9 weeks ago by swillis4 • 10
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tximport of 3 tagged RNA-seq counts from Salmon for downstream analysis with DESeq2
rnaseq deseq2 tximport 3' tagged rna written 8 weeks ago by rbenel • 0 • updated 8 weeks ago by Michael Love ♦ 22k
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Deconvolution Method in Seurat and convert from SingleCellExperiment
rnaseq scater seurat singlecellexperiment written 9 weeks ago by hamza_karakurt • 0 • updated 9 weeks ago by Gordon Smyth ♦ 36k
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