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0
votes
1
answer
19
views
1
answer
AveLogCPM of a library subset
rnaseq edger written 15 hours ago by martin.weihrauch • 0 • updated 13 hours ago by Aaron Lun • 19k
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0
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54
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0
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RNAseq DESeq2 paired data design help
rnaseq deseq2 design matrix written 7 days ago by umlch • 0
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0
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17
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monocle estimateSizeFactors give Inf for all values
rnaseq written 1 day ago by jonessara770 • 10
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0
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60
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0
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Which one to pick if there are duplicate TCGA samples?
rnaseq R tcga tcgabiolinks gdc written 1 day ago by Bioinfo • 60
2
votes
1
answer
68
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1
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EdgeR: Prior degrees of freedom effect on tag wise dispersion
rnaseq edger R rna-seq written 4 days ago by r.beeloo • 0 • updated 4 days ago by Aaron Lun • 19k
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3
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62
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3
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WGCNA: intrepreting grey unassigned "module"?
rnaseq wgcna gene expression co-expression network written 7 days ago by davidjameswheatcroft • 0 • updated 7 days ago by Peter Langfelder • 1.4k
2
votes
1
answer
56
views
1
answer
Limma model for paired and pool together
rnaseq limma design written 8 days ago by b.nota • 290 • updated 8 days ago by Ryan C. Thompson ♦ 6.5k
2
votes
1
answer
54
views
1
answer
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene r 3.4.2 mac written 9 days ago by harry.horsnell.17 • 0 • updated 9 days ago by shepherl ♦♦ 560
1
vote
1
answer
88
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1
answer
Allele-specific expression with different gene lenghts
rnaseq deseq2 allele-specific-expression written 10 days ago by gtechbio • 0 • updated 9 days ago by Michael Love ♦ 17k
0
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1
answer
69
views
1
answer
featureCounts taking 4-10 hours per BAM file?
rnaseq R featurecounts written 10 days ago by octopuslegs11 • 0
1
vote
1
answer
77
views
1
answer
Trying to simplify Interaction analysis with edger, and propably failing to do so?
rnaseq edger interactions differential gene expression multiple factor design written 17 days ago by David Rengel • 70
0
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0
answers
43
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0
answers
Job: Postdoctoral Position: Posttranscriptional gene regulation in T cells (analysis of RNAseq, metabolomics)
rnaseq metabolomics job switzerland basel written 15 days ago by Robert Ivanek • 500
0
votes
2
answers
516
views
2
answers
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 11 months ago by CodeAway • 20 • updated 16 days ago by angela.ubn • 0
2
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1
answer
52
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1
answer
Repeated Measures, Within-Subject, Between-Groups RNAseq Analysis
rnaseq edger repeated measures written 17 days ago by wjh180 • 0 • updated 17 days ago by Ryan C. Thompson ♦ 6.5k
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1
answer
53
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1
answer
Error while Installing DESeq2
rnaseq deseq2 software error R written 23 days ago by k.kathirvel93 • 0 • updated 23 days ago by Michael Love ♦ 17k
0
votes
1
answer
123
views
1
answer
Using tximport on rsem files produces error while trying to read in files
rnaseq R tpm tximport rsem written 28 days ago by stephan.emmrich • 0
0
votes
1
answer
53
views
1
answer
Time-series Experiments with Varied Drug Concentrations Design Matri
rnaseq deseq2 written 29 days ago by yocrec • 0 • updated 28 days ago by Michael Love ♦ 17k
1
vote
1
answer
86
views
1
answer
DESeq2 confounding cartridge
rnaseq deseq2 differential gene expression nanostring confounders written 4 weeks ago by kim.malek88 • 0 • updated 29 days ago by Michael Love ♦ 17k
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2
answers
1.7k
views
2
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Going crazy with normalizing TCGA raw rsem gene count
rnaseq normalization cancer differential gene expression tcga written 3.0 years ago by ezz • 0 • updated 4 weeks ago by Dimitris Vavoulis • 0
1
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0
answers
88
views
0
answers
How to compare RNA-seq counts matrices from different aligners ?
rnaseq counts alignement written 4 weeks ago by Aurora • 10
2
votes
1
answer
960
views
1
answer
DESeq2: one condition vs multiple combined
rnaseq deseq2 written 20 months ago by Konstantin Okonechnikov • 0 • updated 5 weeks ago by rammohanshukla • 10
0
votes
0
answers
42
views
0
answers
topGO (Version: 2.30.1) - weight01 algorithm
rnaseq topgo gene ontology pathway analysis deg written 5 weeks ago by digrigor • 0
0
votes
0
answers
245
views
0
answers
Job: Postdoc on integrating and analyzing new transcriptome types in the Bgee database
rnaseq job data integration pacbio single-cell across species written 5 weeks ago by bgee • 0
0
votes
0
answers
67
views
0
answers
GenomicFeatures: could not find symbol "recursive" in environment of the generic function
rnaseq genomicfeatures txdb written 5 weeks ago by lucasmacielbiotec • 0
1
vote
1
answer
82
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1
answer
If transcript-to-gene conversion is needed in kallisto > tximport > DESeq2 pipeline
rnaseq deseq2 tximport kallisto written 6 weeks ago by Yunlu Zhu • 0 • updated 6 weeks ago by Michael Love ♦ 17k
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