0
votes
1
answer
298
views
1
answer
Rsamtools: system.file no file found
rsamtools bam file written 3 months ago by seungjoon.kim0 • updated 3 months ago by Martin Morgan ♦♦ 20k
3
votes
1
answer
293
views
1
answer
samtools loading in R
rsamtools samtools written 3 months ago by rbronste20 • updated 3 months ago by Martin Morgan ♦♦ 20k
1
vote
0
answers
185
views
0
answers
5
votes
1
answer
167
views
1
answer
0
votes
3
answers
118
views
3
answers
2
votes
1
answer
192
views
1
answer
extracting Allele Read Counts - part2
variantannotation rsamtools written 7 months ago by Bogdan470 • updated 7 months ago by James W. MacDonald45k
5
votes
2
answers
192
views
2
answers
extracting Allele Read Counts
rsamtools vcf written 7 months ago by Bogdan470
3
votes
1
answer
187
views
1
answer
Does Rsamtools support tag names with number characters? i.e ."B1"
rsamtools bug written 7 months ago by joelrrv0 • updated 7 months ago by Martin Morgan ♦♦ 20k
3
votes
1
answer
193
views
1
answer
How are duplicates determined with readGAlignments/scanBam?
rsamtools genomicalignments written 8 months ago by jfiksel20 • updated 8 months ago by Mike Smith2.1k
2
votes
1
answer
199
views
1
answer
Rsamtools scanFa slow?
rsamtools written 9 months ago by cmdcolin10 • updated 9 months ago by Martin Morgan ♦♦ 20k
3
votes
1
answer
277
views
1
answer
0
votes
1
answer
226
views
1
answer
count coverage for exact matches to sequence pattern
genomicfeatures rsamtools written 10 months ago by Vang Le70 • updated 10 months ago by Michael Lawrence9.8k
0
votes
3
answers
232
views
3
answers
1
vote
1
answer
306
views
1
answer
2
votes
1
answer
251
views
1
answer
RNAseq workflow exception with Rsamtools
rsamtools genomicalignments written 14 months ago by jmlCT10 • updated 14 months ago by Mike Smith2.1k
2
votes
1
answer
314
views
1
answer
0
votes
0
answers
253
views
0
answers
Rsamtools filterBam question
rsamtools written 14 months ago by Vivek.b40
3
votes
1
answer
319
views
1
answer
Plotting only intergenic reads on chromosomes?
genomegraphs rsamtools gviz bam samtools written 15 months ago by Mehmet Ilyas Cosacak0 • updated 15 months ago by Martin Morgan ♦♦ 20k
8
votes
2
answers
283
views
2
answers
Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 16 months ago by rubi70 • updated 16 months ago by Gordon Smyth32k
4
votes
1
answer
322
views
1
answer
1
vote
1
answer
263
views
1
answer
2
votes
1
answer
248
views
1
answer
inconsistent results from applyPileups and pileLettersAt
rsamtools pileup galignments written 18 months ago by jesper.gadin10 • updated 18 months ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
279
views
1
answer
Error Raised When Trying To Use pileup()
biostrings shortread hilbertvis rsamtools written 18 months ago by travis.m.couture0 • updated 18 months ago by Martin Morgan ♦♦ 20k
0
votes
0
answers
404
views
0
answers
1
vote
0
answers
352
views
0
answers
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