3
votes
1
answer
150
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 10 weeks ago by MengChun Tseng10 • updated 17 days ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
74
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 11 weeks ago by supremerulersuraj0 • updated 11 weeks ago by Aaron Lun20k
5
votes
1
answer
81
views
1
answer
0
votes
2
answers
668
views
2
answers
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 14 months ago by CodeAway20 • updated 3 months ago by angela.ubn0
1
vote
1
answer
121
views
1
answer
Inserting "Biotype" into scater SCE objects
R scater sce biotype written 4 months ago by thebadpenny0 • updated 4 months ago by Aaron Lun20k
4
votes
3
answers
231
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 4 months ago by Marina V.V.0 • updated 4 months ago by Aaron Lun20k
1
vote
1
answer
202
views
1
answer
0
votes
1
answer
136
views
1
answer
calculateQCmetrics doesn't accept `numeric` `feature_controls` in scater 1.6.2
scater written 5 months ago by Andrew_McDavid130 • updated 5 months ago by Aaron Lun20k
0
votes
2
answers
379
views
2
answers
error when installing beachmat
scater beachmat written 7 months ago by j.xu30 • updated 5 months ago by galib3610
1
vote
1
answer
231
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 6 months ago by nk0 • updated 5 months ago by Aaron Lun20k
0
votes
0
answers
142
views
0
answers
0
votes
1
answer
258
views
1
answer
1
vote
2
answers
323
views
2
answers
SC3_estimate_k formatting error?
scater sc3 written 8 months ago by alexandriapinto110 • updated 7 months ago by Vladimir Kiselev130
5
votes
2
answers
533
views
2
answers
0
votes
1
answer
253
views
1
answer
Error scatter when creating SingleCellExperiment
scater written 8 months ago by ines.desantiago0 • updated 8 months ago by Aaron Lun20k
3
votes
1
answer
351
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 8 months ago by wt2150 • updated 8 months ago by davis90
0
votes
2
answers
521
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 9 months ago by chriad10 • updated 9 months ago by davis90
3
votes
1
answer
359
views
1
answer
Error when merging SCESet objects
single-cell scater written 10 months ago by NathL0 • updated 10 months ago by Aaron Lun20k
1
vote
1
answer
522
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 11 months ago by rmf0 • updated 10 months ago by Vladimir Kiselev130
1
vote
1
answer
667
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 11 months ago by Jenn20 • updated 11 months ago by Aaron Lun20k
3
votes
2
answers
3.3k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 14 months ago by nhejazi0 • updated 12 months ago by andrew.blake30
3
votes
1
answer
532
views
1
answer
Sparse matrices in Bioconductor objects for single-cell analyses
workflows scater simplesinglecell written 13 months ago by sandmann.t40 • updated 13 months ago by Aaron Lun20k
0
votes
2
answers
501
views
2
answers
How does newSCESet calculate expression matrix
scater written 13 months ago by siajunren0 • updated 13 months ago by davis90
0
votes
1
answer
269
views
1
answer
calcAverage missing from Scater package
scater written 14 months ago by siajunren0 • updated 14 months ago by Aaron Lun20k
1
vote
2
answers
380
views
2
answers
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