Showing: scaterreset
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scRNA-seq : Classification of cell cycle phase
scran scater written 3 months ago by Bogdan580 • updated 3 months ago by Aaron Lun25k
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216
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scRNA-seq : runPCA() and denoisePCA()
scran scater written 3 months ago by Bogdan580 • updated 3 months ago by Aaron Lun25k
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133
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number of cell clusters in scRNA-seq
scran scater sc3 written 3 months ago by Bogdan580 • updated 3 months ago by Aaron Lun25k
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150
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191
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2
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165
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4
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232
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Using SC3 with batch corrected MNN values
scran scater sc3 scrna-seq batch correction written 6 months ago by hamza_karakurt30 • updated 6 months ago by Vladimir Kiselev150
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274
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Log2(RPKM) counts in Bioconductor
R rpkm expression scater calcaverage written 6 months ago by kushshah10 • updated 6 months ago by Aaron Lun25k
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231
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Dunn Index for Clusters from scRNA-Seq
clustering scran scater scrna-seq dunn index written 7 months ago by hamza_karakurt30 • updated 7 months ago by Aaron Lun25k
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218
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248
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232
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scater error: invalid rownames length
scater written 7 months ago by lileijie19920 • updated 7 months ago by Aaron Lun25k
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182
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1
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scran/scater Normalized matrix
scran normalized counts scater written 9 months ago by Radek60 • updated 9 months ago by Aaron Lun25k
7
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301
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1
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2
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347
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Gene ID to Gene Name/Symbol in loom files
scater loomr scopeloomr written 9 months ago by Abhishek Singh20 • updated 9 months ago by Aaron Lun25k
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420
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1
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1
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239
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How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 10 months ago by Abhishek Singh20 • updated 10 months ago by Aaron Lun25k
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250
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Top variable features used by 'runPCA' in scater
pca scater features written 10 months ago by jws0 • updated 10 months ago by Aaron Lun25k
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254
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plotPlatePosition and plate_position
R scater singlecellexperiment written 10 months ago by TJ0 • updated 10 months ago by Aaron Lun25k
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1
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368
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1
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Problem installing scater
R bioconductor scater biocmanager written 10 months ago by hfberg0 • updated 10 months ago by Aaron Lun25k
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276
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Change the number of clusters with scater
clustering scran scater scrnaseq written 10 months ago by shbrief10 • updated 10 months ago by Aaron Lun25k
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