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0
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0
answers
72
views
0
answers
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 4 days ago by rmf • 0
1
vote
1
answer
209
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 19 days ago by Jenn • 20 • updated 19 days ago by Aaron Lun • 15k
1
vote
2
answers
1.2k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 3 months ago by nhejazi • 0 • updated 7 weeks ago by andrew.blake • 10
3
votes
1
answer
111
views
1
answer
Sparse matrices in Bioconductor objects for single-cell analyses
workflows scater simplesinglecell written 8 weeks ago by sandmann.t • 10 • updated 8 weeks ago by Aaron Lun • 15k
0
votes
2
answers
168
views
2
answers
How does newSCESet calculate expression matrix
scater written 12 weeks ago by siajunren • 0 • updated 12 weeks ago by davis • 60
0
votes
1
answer
118
views
1
answer
calcAverage missing from Scater package
scater written 3 months ago by siajunren • 0 • updated 3 months ago by Aaron Lun • 15k
1
vote
2
answers
179
views
2
answers
plotRLE not working in scater
software error scater plotrle written 3 months ago by ian.oslo • 0
0
votes
1
answer
170
views
1
answer
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 3 months ago by CodeAway • 20 • updated 3 months ago by James W. MacDonald ♦ 44k
0
votes
0
answers
113
views
0
answers
Scater: mito.drop on an absolute value ?
rnaseq scater written 3 months ago by maria.vladoiu • 0
3
votes
1
answer
263
views
1
answer
Why does scran's computeSumFactors produce different size factors for cells with the exact same gene counts?
scran scater scrnaseq drop-seq written 4 months ago by Friederike • 10 • updated 4 months ago by Aaron Lun • 15k
4
votes
3
answers
235
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 5 months ago by Assa Yeroslaviz • 1.3k • updated 5 months ago by Vladimir Kiselev • 100
2
votes
1
answer
213
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 6 months ago by Assa Yeroslaviz • 1.3k • updated 6 months ago by Vladimir Kiselev • 100
1
vote
1
answer
270
views
1
answer
sc-RNA data analysis using scater
scater scrna written 6 months ago by hrishi27n • 0 • updated 6 months ago by Aaron Lun • 15k
3
votes
1
answer
291
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 6 months ago by hrishi27n • 0 • updated 6 months ago by Aaron Lun • 15k
3
votes
0
answers
997
views
0
answers
Tutorial: Workflow for low-level analysis of single-cell RNA-seq data
single cell tutorial scran scater written 11 months ago by Aaron Lun • 15k
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