Showing: scaterreset
0
votes
1
answer
54
views
1
answer
scran/scater Normalized matrix
scran normalized counts scater written 16 days ago by Radek40 • updated 16 days ago by Aaron Lun22k
7
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1
answer
93
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1
answer
2
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1
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99
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1
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Gene ID to Gene Name/Symbol in loom files
scater loomr scopeloomr written 28 days ago by Abhishek Singh20 • updated 28 days ago by Aaron Lun22k
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1
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95
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1
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1
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1
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82
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1
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How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 5 weeks ago by Abhishek Singh20 • updated 5 weeks ago by Aaron Lun22k
2
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1
answer
92
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1
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Top variable features used by 'runPCA' in scater
pca scater features written 6 weeks ago by jws0 • updated 6 weeks ago by Aaron Lun22k
3
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1
answer
94
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1
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plotPlatePosition and plate_position
R scater singlecellexperiment written 6 weeks ago by TJ0 • updated 6 weeks ago by Aaron Lun22k
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1
answer
101
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1
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Problem installing scater
R bioconductor scater biocmanager written 6 weeks ago by hfberg0 • updated 6 weeks ago by Aaron Lun22k
2
votes
1
answer
109
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1
answer
Change the number of clusters with scater
clustering scran scater scrnaseq written 9 weeks ago by shbrief10 • updated 9 weeks ago by Aaron Lun22k
1
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1
answer
226
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1
answer
0
votes
1
answer
273
views
1
answer
Scater package PlotExpression
scater written 5 months ago by mayank.geit890
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votes
1
answer
124
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1
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RNAseq scater error in plotQC()
scater scrnaseq plotqc written 6 months ago by Vladimir Krasikov90 • updated 5 months ago by Aaron Lun22k
3
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1
answer
626
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1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 8 months ago by MengChun Tseng10 • updated 6 months ago by Martin Morgan ♦♦ 22k
0
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1
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178
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1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 9 months ago by supremerulersuraj0 • updated 9 months ago by Aaron Lun22k
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1
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178
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1
answer
0
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2
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1.1k
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2
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Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 20 months ago by CodeAway30 • updated 9 months ago by angela.ubn0
1
vote
1
answer
215
views
1
answer
Inserting "Biotype" into scater SCE objects
R scater sce biotype written 10 months ago by thebadpenny0 • updated 10 months ago by Aaron Lun22k
4
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3
answers
653
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3
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Warning: negative size factors
scran scater singlecellexperiment size factor negative written 10 months ago by Marina V.V.0 • updated 10 months ago by Aaron Lun22k
1
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1
answer
367
views
1
answer
0
votes
1
answer
239
views
1
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calculateQCmetrics doesn't accept `numeric` `feature_controls` in scater 1.6.2
scater written 12 months ago by Andrew_McDavid150 • updated 12 months ago by Aaron Lun22k
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2
answers
566
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2
answers
error when installing beachmat
scater beachmat written 13 months ago by j.xu30 • updated 12 months ago by galib3610
1
vote
1
answer
381
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 12 months ago by nk0 • updated 12 months ago by Aaron Lun22k
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0
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221
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0
answers
0
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1
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416
views
1
answer
1
vote
2
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512
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2
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SC3_estimate_k formatting error?
scater sc3 written 14 months ago by alexandriapinto110 • updated 13 months ago by Vladimir Kiselev130
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