Showing: scaterreset
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Using SC3 with batch corrected MNN values
scran scater sc3 scrna-seq batch correction written 20 days ago by hamza_karakurt20 • updated 20 days ago by Vladimir Kiselev150
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Log2(RPKM) counts in Bioconductor
R rpkm expression scater calcaverage written 20 days ago by kushshah10 • updated 20 days ago by Aaron Lun23k
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Dunn Index for Clusters from scRNA-Seq
clustering scran scater scrna-seq dunn index written 6 weeks ago by hamza_karakurt20 • updated 6 weeks ago by Aaron Lun23k
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scater error: invalid rownames length
scater written 9 weeks ago by lileijie19920 • updated 9 weeks ago by Aaron Lun23k
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101
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scran/scater Normalized matrix
scran normalized counts scater written 3 months ago by Radek50 • updated 3 months ago by Aaron Lun23k
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150
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2
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177
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Gene ID to Gene Name/Symbol in loom files
scater loomr scopeloomr written 4 months ago by Abhishek Singh20 • updated 4 months ago by Aaron Lun23k
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230
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140
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How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 4 months ago by Abhishek Singh20 • updated 4 months ago by Aaron Lun23k
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156
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Top variable features used by 'runPCA' in scater
pca scater features written 4 months ago by jws0 • updated 4 months ago by Aaron Lun23k
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160
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plotPlatePosition and plate_position
R scater singlecellexperiment written 4 months ago by TJ0 • updated 4 months ago by Aaron Lun23k
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223
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Problem installing scater
R bioconductor scater biocmanager written 4 months ago by hfberg0 • updated 4 months ago by Aaron Lun23k
2
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173
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Change the number of clusters with scater
clustering scran scater scrnaseq written 5 months ago by shbrief10 • updated 5 months ago by Aaron Lun23k
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0
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Scater package PlotExpression
scater written 8 months ago by mayank.geit890
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RNAseq scater error in plotQC()
scater scrnaseq plotqc written 9 months ago by Vladimir Krasikov90 • updated 9 months ago by Aaron Lun23k
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rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 11 months ago by MengChun Tseng10 • updated 9 months ago by Martin Morgan ♦♦ 23k
0
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Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 12 months ago by supremerulersuraj0 • updated 12 months ago by Aaron Lun23k
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Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 23 months ago by CodeAway30 • updated 12 months ago by angela.ubn0
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