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0
votes
2
answers
99
views
2
answers
problems when working with SingleCellExperiment object in scater
scater singlecellexperiment written 19 days ago by chriad • 0 • updated 19 days ago by davis • 60
3
votes
1
answer
149
views
1
answer
Error when merging SCESet objects
single-cell scater written 5 weeks ago by NathL • 0 • updated 5 weeks ago by Aaron Lun • 16k
1
vote
1
answer
404
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 9 weeks ago by rmf • 0 • updated 6 weeks ago by Vladimir Kiselev • 110
1
vote
1
answer
508
views
1
answer
Scater normalizeExprs() batch effect
batch effect scater written 11 weeks ago by Jenn • 20 • updated 11 weeks ago by Aaron Lun • 16k
1
vote
2
answers
1.8k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 5 months ago by nhejazi • 0 • updated 3 months ago by andrew.blake • 10
3
votes
1
answer
179
views
1
answer
Sparse matrices in Bioconductor objects for single-cell analyses
workflows scater simplesinglecell written 3 months ago by sandmann.t • 20 • updated 3 months ago by Aaron Lun • 16k
0
votes
2
answers
212
views
2
answers
How does newSCESet calculate expression matrix
scater written 4 months ago by siajunren • 0 • updated 4 months ago by davis • 60
0
votes
1
answer
156
views
1
answer
calcAverage missing from Scater package
scater written 5 months ago by siajunren • 0 • updated 4 months ago by Aaron Lun • 16k
1
vote
2
answers
225
views
2
answers
plotRLE not working in scater
software error scater plotrle written 5 months ago by ian.oslo • 0
0
votes
1
answer
229
views
1
answer
Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 5 months ago by CodeAway • 20 • updated 5 months ago by James W. MacDonald ♦ 44k
0
votes
0
answers
143
views
0
answers
Scater: mito.drop on an absolute value ?
rnaseq scater written 5 months ago by maria.vladoiu • 0
3
votes
1
answer
344
views
1
answer
Why does scran's computeSumFactors produce different size factors for cells with the exact same gene counts?
scran scater scrnaseq drop-seq written 6 months ago by Friederike • 10 • updated 6 months ago by Aaron Lun • 16k
4
votes
3
answers
284
views
3
answers
using SC3 and scater for bulk-RNAseq
scater sc3 scrnaseq written 7 months ago by Assa Yeroslaviz • 1.3k • updated 7 months ago by Vladimir Kiselev • 110
2
votes
1
answer
261
views
1
answer
sc3_prepare function error
single cell single-cell scater sc3 written 8 months ago by Assa Yeroslaviz • 1.3k • updated 8 months ago by Vladimir Kiselev • 110
1
vote
1
answer
303
views
1
answer
sc-RNA data analysis using scater
scater scrna written 8 months ago by hrishi27n • 0 • updated 8 months ago by Aaron Lun • 16k
3
votes
1
answer
350
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 8 months ago by hrishi27n • 0 • updated 8 months ago by Aaron Lun • 16k
3
votes
0
answers
1.1k
views
0
answers
Tutorial: Workflow for low-level analysis of single-cell RNA-seq data
single cell tutorial scran scater written 13 months ago by Aaron Lun • 16k
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