Showing: scater • reset
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Dunn Index for Clusters from scRNA-Seq
clustering scran scater scrna-seq dunn index written 9 days ago by hamza_karakurt • 0 • updated 9 days ago by Aaron Lun • 23k
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Modularity values of clusters and Differential Expression in scRNA-Seq
igraph scran scater scrna-seq rots written 20 days ago by hamza_karakurt • 0 • updated 20 days ago by Aaron Lun • 23k
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Adding labels on clusters in a t-SNE plot and changing colors
ggplot2 rtsne scran scater scrna-seq written 26 days ago by hamza_karakurt • 0 • updated 26 days ago by Aaron Lun • 23k
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scater error: invalid rownames length
scater written 27 days ago by lileijie1992 • 0 • updated 27 days ago by Aaron Lun • 23k
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scran/scater Normalized matrix
scran normalized counts scater written 10 weeks ago by Radek • 50 • updated 10 weeks ago by Aaron Lun • 23k
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scran: Are the log counts expression comparable among different genes within a sample/cell ?
scran scater written 11 weeks ago by heyao • 30 • updated 11 weeks ago by Aaron Lun • 23k
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Gene ID to Gene Name/Symbol in loom files
scater loomr scopeloomr written 11 weeks ago by Abhishek Singh • 20 • updated 11 weeks ago by Aaron Lun • 23k
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Deconvolution Method in Seurat and convert from SingleCellExperiment
rnaseq scater seurat singlecellexperiment written 3 months ago by hamza_karakurt • 0 • updated 3 months ago by Gordon Smyth ♦ 36k
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How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 3 months ago by Abhishek Singh • 20 • updated 3 months ago by Aaron Lun • 23k
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Top variable features used by 'runPCA' in scater
pca scater features written 3 months ago by jws • 0 • updated 3 months ago by Aaron Lun • 23k
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plotPlatePosition and plate_position
R scater singlecellexperiment written 3 months ago by TJ • 0 • updated 3 months ago by Aaron Lun • 23k
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Problem installing scater
R bioconductor scater biocmanager written 3 months ago by hfberg • 0 • updated 3 months ago by Aaron Lun • 23k
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Change the number of clusters with scater
clustering scran scater scrnaseq written 3 months ago by shbrief • 10 • updated 3 months ago by Aaron Lun • 23k
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newSCESet and SingleCellExperiment basic differences and TMM Normalization
rnaseq single-cell scater seurat singlecellexperiment written 5 months ago by hamza_karakurt • 0
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Scater package PlotExpression
scater written 7 months ago by mayank.geit89 • 0
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RNAseq scater error in plotQC()
scater scrnaseq plotqc written 7 months ago by Vladimir Krasikov • 90 • updated 7 months ago by Aaron Lun • 23k
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rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 10 months ago by MengChun Tseng • 10 • updated 8 months ago by Martin Morgan ♦♦ 23k
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Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 10 months ago by supremerulersuraj • 0 • updated 10 months ago by Aaron Lun • 23k
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Accessing normalized counts
scater splatter singlecellexperiment written 11 months ago by luke.zappia • 50
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Change point size and remove outline in scater's plotPCA
rnaseq single-cell scater written 22 months ago by CodeAway • 30 • updated 11 months ago by angela.ubn • 0
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Inserting "Biotype" into scater SCE objects
R scater sce biotype written 12 months ago by thebadpenny • 0 • updated 12 months ago by Aaron Lun • 23k
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Warning: negative size factors
scran scater singlecellexperiment size factor negative written 12 months ago by Marina V.V. • 0 • updated 12 months ago by Aaron Lun • 23k
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SingleCellExperiment object cannot be used by Scater package?
scater simplesinglecell singlecellexperiment written 13 months ago by Xingyu • 0 • updated 13 months ago by Aaron Lun • 23k
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calculateQCmetrics doesn't accept `numeric` `feature_controls` in scater 1.6.2
scater written 13 months ago by Andrew_McDavid • 190 • updated 13 months ago by Aaron Lun • 23k
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error when installing beachmat
scater beachmat written 15 months ago by j.xu3 • 0 • updated 14 months ago by galib36 • 10
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