0
votes
1
answer
107
views
1
answer
Error of makeTechTrend() of Scran
scran single-cell seq.default written 3 months ago by Guangshuai Jia0 • updated 3 months ago by Aaron Lun21k
1
vote
1
answer
88
views
1
answer
Adjust number of clusters with scran/buildSNNGraph
scran single-cell buildsnngraph cluster_walktrap written 3 months ago by tobi0 • updated 3 months ago by Aaron Lun21k
1
vote
1
answer
150
views
1
answer
SCRAN - Question: Error when calling cosineNorm through fastMNN
scran mnncorrect fastmnn written 4 months ago by tobi0 • updated 4 months ago by Aaron Lun21k
1
vote
1
answer
158
views
1
answer
3
votes
1
answer
429
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 6 months ago by MengChun Tseng10 • updated 4 months ago by Martin Morgan ♦♦ 22k
6
votes
1
answer
309
views
1
answer
0
votes
1
answer
134
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 6 months ago by supremerulersuraj0 • updated 6 months ago by Aaron Lun21k
1
vote
2
answers
189
views
2
answers
4
votes
3
answers
523
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 8 months ago by Marina V.V.0 • updated 8 months ago by Aaron Lun21k
6
votes
1
answer
692
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 9 months ago by Dave Tang210 • updated 9 months ago by Aaron Lun21k
1
vote
1
answer
327
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 10 months ago by nk0 • updated 10 months ago by Aaron Lun21k
2
votes
1
answer
256
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 10 months ago by roman.hillje0 • updated 10 months ago by Aaron Lun21k
0
votes
2
answers
384
views
2
answers
scran::trendVar throwing error
scran written 11 months ago by zhalehsafikhani0
3
votes
1
answer
550
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 13 months ago by wt2150 • updated 13 months ago by davis90
1
vote
1
answer
296
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 13 months ago by berry140 • updated 13 months ago by Aaron Lun21k
0
votes
1
answer
683
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 13 months ago by rmf0 • updated 13 months ago by Aaron Lun21k
2
votes
1
answer
449
views
1
answer
Scran functions not found
scran single-cell written 14 months ago by alva.james0 • updated 14 months ago by Aaron Lun21k
3
votes
1
answer
653
views
1
answer
0
votes
1
answer
1.1k
views
1
answer
3
votes
1
answer
279
views
1
answer
Normalizing vs RNA content in scRNAseq data
monocle scran written 16 months ago by ankur.chakravarthy.1020 • updated 16 months ago by Aaron Lun21k
3
votes
1
answer
1.0k
views
1
answer
3
votes
1
answer
628
views
1
answer
Scran normalization error with computeSumFactors
scran scater written 21 months ago by hrishi27n0 • updated 21 months ago by Aaron Lun21k
3
votes
0
answers
1.7k
views
0
answers
1
vote
2
answers
518
views
2
answers
0
votes
1
answer
422
views
1
answer
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