Showing: scranreset
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Using SC3 with batch corrected MNN values
scran scater sc3 scrna-seq batch correction written 7 weeks ago by hamza_karakurt30 • updated 7 weeks ago by Vladimir Kiselev150
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normalization for infected homogenious cell populations
normalization single cell scran written 9 weeks ago by jcvera0 • updated 9 weeks ago by Aaron Lun23k
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Dunn Index for Clusters from scRNA-Seq
clustering scran scater scrna-seq dunn index written 10 weeks ago by hamza_karakurt30 • updated 10 weeks ago by Aaron Lun23k
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Error in installation of scran
iranges genomicranges xvector s4vectors scran written 4 months ago by Momo0 • updated 4 months ago by Aaron Lun23k
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scran/scater Normalized matrix
scran normalized counts scater written 4 months ago by Radek50 • updated 4 months ago by Aaron Lun23k
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169
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How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 5 months ago by Abhishek Singh20 • updated 5 months ago by Aaron Lun23k
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[MnnCorrect] Remove batch effects but keep condition effects
rnaseq scran single-cell mnncorrect written 5 months ago by John Reid10 • updated 5 months ago by Aaron Lun23k
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Change the number of clusters with scater
clustering scran scater scrnaseq written 6 months ago by shbrief10 • updated 6 months ago by Aaron Lun23k
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Error of makeTechTrend() of Scran
scran single-cell seq.default written 9 months ago by Guangshuai Jia0 • updated 9 months ago by Aaron Lun23k
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Adjust number of clusters with scran/buildSNNGraph
scran single-cell buildsnngraph cluster_walktrap written 9 months ago by tobi0 • updated 9 months ago by Aaron Lun23k
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SCRAN - Question: Error when calling cosineNorm through fastMNN
scran mnncorrect fastmnn written 10 months ago by tobi0 • updated 10 months ago by Aaron Lun23k
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rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 12 months ago by MengChun Tseng10 • updated 10 months ago by Martin Morgan ♦♦ 23k
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Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 13 months ago by supremerulersuraj0 • updated 13 months ago by Aaron Lun23k
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Warning: negative size factors
scran scater singlecellexperiment size factor negative written 15 months ago by Marina V.V.0 • updated 15 months ago by Aaron Lun23k
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Downstream analysis after using mnnCorrect()
scran mnncorrect written 15 months ago by Dave Tang210 • updated 15 months ago by Aaron Lun23k
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