Showing: scranreset
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Dunn Index for Clusters from scRNA-Seq
clustering scran scater scrna-seq dunn index written 10 days ago by hamza_karakurt0 • updated 10 days ago by Aaron Lun23k
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Error in installation of scran
iranges genomicranges xvector s4vectors scran written 10 weeks ago by Momo0 • updated 9 weeks ago by Aaron Lun23k
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scran/scater Normalized matrix
scran normalized counts scater written 10 weeks ago by Radek50 • updated 10 weeks ago by Aaron Lun23k
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How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 3 months ago by Abhishek Singh20 • updated 3 months ago by Aaron Lun23k
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[MnnCorrect] Remove batch effects but keep condition effects
rnaseq scran single-cell mnncorrect written 3 months ago by John Reid10 • updated 3 months ago by Aaron Lun23k
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Change the number of clusters with scater
clustering scran scater scrnaseq written 4 months ago by shbrief10 • updated 4 months ago by Aaron Lun23k
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Error of makeTechTrend() of Scran
scran single-cell seq.default written 7 months ago by Guangshuai Jia0 • updated 7 months ago by Aaron Lun23k
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Adjust number of clusters with scran/buildSNNGraph
scran single-cell buildsnngraph cluster_walktrap written 7 months ago by tobi0 • updated 7 months ago by Aaron Lun23k
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SCRAN - Question: Error when calling cosineNorm through fastMNN
scran mnncorrect fastmnn written 8 months ago by tobi0 • updated 8 months ago by Aaron Lun23k
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rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 10 months ago by MengChun Tseng10 • updated 8 months ago by Martin Morgan ♦♦ 23k
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Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 11 months ago by supremerulersuraj0 • updated 11 months ago by Aaron Lun23k
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Warning: negative size factors
scran scater singlecellexperiment size factor negative written 12 months ago by Marina V.V.0 • updated 12 months ago by Aaron Lun23k
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Downstream analysis after using mnnCorrect()
scran mnncorrect written 13 months ago by Dave Tang210 • updated 13 months ago by Aaron Lun23k
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scater/scran with TPMs from Salmon - counts?
salmon scran scater written 14 months ago by nk0 • updated 14 months ago by Aaron Lun23k
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scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 14 months ago by roman.hillje0 • updated 14 months ago by Aaron Lun23k
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scran::trendVar throwing error
scran written 15 months ago by zhalehsafikhani0
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is SCEset fully abandoned in scran?
normalization scran scater splatter written 17 months ago by wt2150 • updated 17 months ago by davis90
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Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 17 months ago by berry140 • updated 17 months ago by Aaron Lun23k
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