Showing: scranreset
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scRNA-seq : Classification of cell cycle phase
scran scater written 19 days ago by Bogdan560 • updated 18 days ago by Aaron Lun24k
3
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112
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scRNA-seq : runPCA() and denoisePCA()
scran scater written 19 days ago by Bogdan560 • updated 18 days ago by Aaron Lun24k
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81
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number of cell clusters in scRNA-seq
scran scater sc3 written 20 days ago by Bogdan560 • updated 20 days ago by Aaron Lun24k
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3
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72
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Is logFC a log2 fold change or some other base in scran::findMarkers
scran written 5 weeks ago by Chris Conley0 • updated 5 weeks ago by Aaron Lun24k
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152
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4
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137
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4
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153
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Using SC3 with batch corrected MNN values
scran scater sc3 scrna-seq batch correction written 3 months ago by hamza_karakurt30 • updated 3 months ago by Vladimir Kiselev150
2
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128
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normalization for infected homogenious cell populations
normalization single cell scran written 3 months ago by jcvera0 • updated 3 months ago by Aaron Lun24k
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135
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1
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173
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Dunn Index for Clusters from scRNA-Seq
clustering scran scater scrna-seq dunn index written 4 months ago by hamza_karakurt30 • updated 4 months ago by Aaron Lun24k
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158
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159
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2
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249
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Error in installation of scran
iranges genomicranges xvector s4vectors scran written 6 months ago by Momo0 • updated 6 months ago by Aaron Lun24k
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137
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scran/scater Normalized matrix
scran normalized counts scater written 6 months ago by Radek60 • updated 6 months ago by Aaron Lun24k
7
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228
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1
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184
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How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 7 months ago by Abhishek Singh20 • updated 7 months ago by Aaron Lun24k
2
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389
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[MnnCorrect] Remove batch effects but keep condition effects
rnaseq scran single-cell mnncorrect written 7 months ago by John Reid10 • updated 7 months ago by Aaron Lun24k
2
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220
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Change the number of clusters with scater
clustering scran scater scrnaseq written 7 months ago by shbrief10 • updated 7 months ago by Aaron Lun24k
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255
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Error of makeTechTrend() of Scran
scran single-cell seq.default written 11 months ago by Guangshuai Jia0 • updated 11 months ago by Aaron Lun24k
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229
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Adjust number of clusters with scran/buildSNNGraph
scran single-cell buildsnngraph cluster_walktrap written 11 months ago by tobi0 • updated 11 months ago by Aaron Lun24k
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361
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SCRAN - Question: Error when calling cosineNorm through fastMNN
scran mnncorrect fastmnn written 12 months ago by tobi0 • updated 12 months ago by Aaron Lun24k
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