Showing: scranreset
1
vote
1
answer
79
views
1
answer
Error in installation of scran
iranges genomicranges xvector s4vectors scran written 13 days ago by Momo0 • updated 13 days ago by Aaron Lun22k
0
votes
1
answer
54
views
1
answer
scran/scater Normalized matrix
scran normalized counts scater written 16 days ago by Radek40 • updated 16 days ago by Aaron Lun22k
7
votes
1
answer
93
views
1
answer
1
vote
1
answer
82
views
1
answer
How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 5 weeks ago by Abhishek Singh20 • updated 5 weeks ago by Aaron Lun22k
2
votes
1
answer
159
views
1
answer
2
votes
1
answer
109
views
1
answer
Change the number of clusters with scater
clustering scran scater scrnaseq written 9 weeks ago by shbrief10 • updated 9 weeks ago by Aaron Lun22k
0
votes
1
answer
154
views
1
answer
Error of makeTechTrend() of Scran
scran single-cell seq.default written 5 months ago by Guangshuai Jia0 • updated 5 months ago by Aaron Lun22k
1
vote
1
answer
131
views
1
answer
Adjust number of clusters with scran/buildSNNGraph
scran single-cell buildsnngraph cluster_walktrap written 5 months ago by tobi0 • updated 5 months ago by Aaron Lun22k
1
vote
1
answer
222
views
1
answer
SCRAN - Question: Error when calling cosineNorm through fastMNN
scran mnncorrect fastmnn written 6 months ago by tobi0 • updated 6 months ago by Aaron Lun22k
1
vote
1
answer
212
views
1
answer
3
votes
1
answer
629
views
1
answer
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scran single-cell scater written 8 months ago by MengChun Tseng10 • updated 6 months ago by Martin Morgan ♦♦ 22k
6
votes
1
answer
418
views
1
answer
0
votes
1
answer
178
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 9 months ago by supremerulersuraj0 • updated 9 months ago by Aaron Lun22k
1
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2
answers
220
views
2
answers
4
votes
3
answers
656
views
3
answers
Warning: negative size factors
scran scater singlecellexperiment size factor negative written 10 months ago by Marina V.V.0 • updated 10 months ago by Aaron Lun22k
6
votes
1
answer
836
views
1
answer
Downstream analysis after using mnnCorrect()
scran mnncorrect written 11 months ago by Dave Tang210 • updated 11 months ago by Aaron Lun22k
1
vote
1
answer
381
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 12 months ago by nk0 • updated 12 months ago by Aaron Lun22k
2
votes
1
answer
319
views
1
answer
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran written 12 months ago by roman.hillje0 • updated 12 months ago by Aaron Lun22k
0
votes
2
answers
458
views
2
answers
scran::trendVar throwing error
scran written 13 months ago by zhalehsafikhani0
3
votes
1
answer
649
views
1
answer
is SCEset fully abandoned in scran?
normalization scran scater splatter written 15 months ago by wt2150 • updated 15 months ago by davis90
1
vote
1
answer
335
views
1
answer
Missing design when using Scran to create a DESeqDataSet
deseq2 scran written 15 months ago by berry140 • updated 15 months ago by Aaron Lun22k
1
vote
1
answer
849
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 16 months ago by rmf10 • updated 16 months ago by Aaron Lun22k
2
votes
1
answer
486
views
1
answer
Scran functions not found
scran single-cell written 17 months ago by alva.james0 • updated 17 months ago by Aaron Lun22k
3
votes
1
answer
697
views
1
answer
0
votes
1
answer
1.1k
views
1
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