Showing: scrna-seq • reset
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2
votes
1
answer
108
views
1
answer
Batch Corrections (MNN) with TPM values
rna-seq scran scater scrna-seq mnn written 8 weeks ago by hamza_karakurt • 30 • updated 8 weeks ago by Aaron Lun • 25k
2
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1
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216
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1
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DE analysis for 10X scRNA-seq data with multiple conditions and multiple replicates
de seurat scrna-seq written 3 months ago by ilee8 • 0 • updated 3 months ago by Aaron Lun • 25k
3
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1
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111
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1
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emptyDrops identified less non-empty cells with lower total UMI counts?
simplesinglecell dropletutils scrna-seq cell calling emptydrops written 3 months ago by C T • 90 • updated 3 months ago by Aaron Lun • 25k
0
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0
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122
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0
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emptyDrops result is full NAs
scran scater dropletutils scrna-seq written 6 months ago by hamza_karakurt • 30
3
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1
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420
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1
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edgeR: Strange volcano plot
edger dgea scrna-seq written 7 months ago by cronanz • 0 • updated 7 months ago by Aaron Lun • 25k
0
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1
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209
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1
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When to combine samples in the pre-processing of 10x scRNA-seq data?
scrna-seq 10x written 7 months ago by jma1991 • 30 • updated 7 months ago by Aaron Lun • 25k
4
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1
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227
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1
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Usage of doubletCells() function before or after the batch correction?
scran scater scrna-seq doubletcells written 8 months ago by hamza_karakurt • 30 • updated 8 months ago by Aaron Lun • 25k
4
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1
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295
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1
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Using SC3 with batch corrected MNN values
scran scater sc3 scrna-seq batch correction written 8 months ago by hamza_karakurt • 30 • updated 8 months ago by Vladimir Kiselev • 150
1
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1
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264
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1
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Dunn Index for Clusters from scRNA-Seq
clustering scran scater scrna-seq dunn index written 9 months ago by hamza_karakurt • 30 • updated 9 months ago by Aaron Lun • 25k
5
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1
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445
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5 follow
1
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Differential Expression Analysis between conditions of single cell RNA-Seq
deseq2 rna-seq scrna-seq differential expression analysis written 9 months ago by hamza_karakurt • 30 • updated 9 months ago by Michael Love ♦ 26k
2
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1
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245
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1
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Modularity values of clusters and Differential Expression in scRNA-Seq
igraph scran scater scrna-seq rots written 9 months ago by hamza_karakurt • 30 • updated 9 months ago by Aaron Lun • 25k
3
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2
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220
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2
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Enrichment Analysis with only GeneSymbols
R rna-seq gsea scrna-seq written 9 months ago by hamza_karakurt • 30 • updated 9 months ago by Peter Langfelder • 2.3k
1
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1
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327
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1
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Adding labels on clusters in a t-SNE plot and changing colors
ggplot2 rtsne scran scater scrna-seq written 9 months ago by hamza_karakurt • 30 • updated 9 months ago by Aaron Lun • 25k
2
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1
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410
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1
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Silhouette Plots for Clustering Quality (Multiple Algorithm)
clustering rna-seq scrna-seq silhouette plot written 10 months ago by hamza_karakurt • 30 • updated 10 months ago by Aaron Lun • 25k
0
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1
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251
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1
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about scRNA-seq, SEURAT and CCA
scrna-seq written 11 months ago by Bogdan • 580 • updated 11 months ago by James W. MacDonald ♦ 52k
1
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1
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212
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1
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gene counts in Seurat after RunCCA() and AlignSubspace()
seurat scrna-seq cca written 11 months ago by Bogdan • 580 • updated 11 months ago by Aaron Lun • 25k
0
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1
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426
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1
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scRNA-seq: a question about the names of the columns in a Seurat object
seurat scrna-seq written 12 months ago by Bogdan • 580 • updated 12 months ago by Steve Lianoglou ♦ 12k
0
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1
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257
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1
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single cell RNA-seq pipeline
rnaseq scrna-seq written 17 months ago by Bogdan • 580 • updated 17 months ago by Aaron Lun • 25k
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