Showing: svareset
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55
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problem for interpretation of resulted ComBat() plot
sva combat rna-seq batch effect written 9 days ago by modarzi10 • updated 9 days ago by W. Evan Johnson800
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61
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78
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Error in sva() function: missing values, NaNs produced
sva batch-correction written 5 weeks ago by tkapell10 • updated 5 weeks ago by James W. MacDonald52k
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85
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2
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2
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171
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SVA for repeated measures design
sva deseq2 repeated measures written 11 weeks ago by sara.blocquiaux0 • updated 10 weeks ago by Robert Castelo2.3k
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99
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Handling adjustment variables and surrogate variables in model
sva deseq2 written 3 months ago by rbutler0 • updated 3 months ago by James W. MacDonald52k
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111
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1
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Bioconductor SVA: two variables of interest
sva written 3 months ago by sara.blocquiaux0 • updated 3 months ago by James W. MacDonald52k
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2
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184
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2
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Design matrix with intercept for multiple cluster comparison
limma sva written 3 months ago by kentfung0 • updated 3 months ago by centralmenu100
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108
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Analyzing a RNA-Seq dataset with paired samples and 2 batches
sva deseq2 combat written 3 months ago by ege.dedeoglu0 • updated 3 months ago by Michael Love26k
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117
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6 follow
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correcting the batch effects in Limma and SVA
limma sva combat written 4 months ago by Bogdan580 • updated 4 months ago by Gordon Smyth39k
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113
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140
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Using surrogate variables as covariates in WGBS differential methylation calling
sva dss dmrseq written 6 months ago by gjl0 • updated 6 months ago by keegan60
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258
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removing batch effect using DESeq and sva
sva deseq2 heatmap batch effect pca written 6 months ago by bioyas0 • updated 6 months ago by Michael Love26k
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198
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5
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221
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1
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169
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DESeq2, how to deal with batch effect: t-test or design matrix?
sva deseq2 design matrix batch t-test written 7 months ago by Mozart10 • updated 7 months ago by Michael Love26k
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385
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172
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svaseq - over adjustment
sva svaseq written 8 months ago by flippy230
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229
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1
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Computationally Singular Matrices - DESeq
rnaseq sva deseq2 written 8 months ago by flippy230 • updated 8 months ago by Michael Love26k
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267
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1
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Normalized transcript/exon counts for network analysis
dexseq sva wgcna drimseq written 9 months ago by maya.kappil10 • updated 9 months ago by Gosia Nowicka40
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346
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0
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217
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