Showing: svareset
2
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111
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SVA for repeated measures design
sva deseq2 repeated measures written 24 days ago by sara.blocquiaux0 • updated 17 days ago by Robert Castelo2.3k
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1
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107
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1
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Can I colapsing raw read counts?
sva deseq2 R batch written 5 weeks ago by jivarajivaraj10 • updated 4 weeks ago by Michael Love25k
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1
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76
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Handling adjustment variables and surrogate variables in model
sva deseq2 written 5 weeks ago by rbutler0 • updated 5 weeks ago by James W. MacDonald51k
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1
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86
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Bioconductor SVA: two variables of interest
sva written 5 weeks ago by sara.blocquiaux0 • updated 5 weeks ago by James W. MacDonald51k
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2
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149
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2
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Design matrix with intercept for multiple cluster comparison
limma sva written 7 weeks ago by kentfung0 • updated 7 weeks ago by centralmenu100
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1
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77
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Analyzing a RNA-Seq dataset with paired samples and 2 batches
sva deseq2 combat written 7 weeks ago by ege.dedeoglu0 • updated 7 weeks ago by Michael Love25k
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94
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74
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5
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262
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6 follow
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correcting the batch effects in Limma and SVA
limma sva combat written 3 months ago by Bogdan580 • updated 3 months ago by Gordon Smyth38k
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80
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111
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Using surrogate variables as covariates in WGBS differential methylation calling
sva dss dmrseq written 4 months ago by gjl0 • updated 4 months ago by keegan60
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207
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removing batch effect using DESeq and sva
sva deseq2 heatmap batch effect pca written 4 months ago by bioyas0 • updated 4 months ago by Michael Love25k
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133
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178
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143
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DESeq2, how to deal with batch effect: t-test or design matrix?
sva deseq2 design matrix batch t-test written 5 months ago by Mozart10 • updated 5 months ago by Michael Love25k
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316
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1
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148
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svaseq - over adjustment
sva svaseq written 6 months ago by flippy230
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1
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200
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Computationally Singular Matrices - DESeq
rnaseq sva deseq2 written 6 months ago by flippy230 • updated 6 months ago by Michael Love25k
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229
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1
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Normalized transcript/exon counts for network analysis
dexseq sva wgcna drimseq written 8 months ago by maya.kappil10 • updated 7 months ago by Gosia Nowicka40
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300
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1
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0
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168
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4
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5 follow
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[sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
sva written 2.0 years ago by anton.kratz60 • updated 8 months ago by Benjamin_2013140
1
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1
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176
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1
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sva correction for MEDIPS
medips sva svaseq written 8 months ago by tofukaj0 • updated 8 months ago by Lukas Chavez510
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1
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309
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1
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paired sample - SVA model matrix
limma sva paired sample written 10 months ago by flippy230 • updated 10 months ago by James W. MacDonald51k
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