3
votes
1
answer
60
views
1
answer
Taking surrogate variable into account before running PCA
sva svaseq written 9 days ago by wamiqsaifi0 • updated 9 days ago by Guido Hooiveld2.1k
0
votes
0
answers
43
views
0
answers
0
votes
0
answers
80
views
0
answers
0
votes
0
answers
71
views
0
answers
0
votes
0
answers
86
views
0
answers
0
votes
1
answer
111
views
1
answer
2
votes
1
answer
121
views
1
answer
SVA package - ERROR: nvobj = sva(edata, mod, mod0, n.sv=n.sv)
sva R removebatcheffect written 6 weeks ago by aina.jene0 • updated 6 weeks ago by sina.nassiri40
0
votes
1
answer
134
views
1
answer
3
votes
1
answer
138
views
1
answer
2
votes
1
answer
187
views
1
answer
1
vote
1
answer
97
views
1
answer
How to interpret the SVA results
sva combat rna-seq written 12 weeks ago by xie186bioinforcore0 • updated 12 weeks ago by James W. MacDonald43k
1
vote
1
answer
185
views
1
answer
Using SVA with RRBS data
sva rrbs written 3 months ago by mrodrigues.fernanda10 • updated 3 months ago by Jeff Leek460
0
votes
0
answers
112
views
0
answers
4
votes
1
answer
142
views
1
answer
Adjust for multiple batches using combat
limma sva combat written 3 months ago by julia.feichtinger0 • updated 3 months ago by Aaron Lun15k
3
votes
1
answer
217
views
1
answer
(batch) corrections of RNA-seq data: integrating LIMMA and SVA
limma sva svaseq written 4 months ago by Bogdan460 • updated 3 months ago by Aaron Lun15k
3
votes
1
answer
240
views
1
answer
How to normalize chromatin and RNA-Seq data together ?
sva deseq2 combat atac atac-seq written 4 months ago by g.atla0 • updated 3 months ago by Michael Love12k
0
votes
0
answers
140
views
0
answers
0
votes
1
answer
140
views
1
answer
sva: Parallel execution of sva()-function fails.
sva parallel written 4 months ago by maltethodberg30 • updated 4 months ago by Martin Morgan ♦♦ 20k
3
votes
1
answer
222
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 4 months ago by jma199120 • updated 4 months ago by Aaron Lun15k
0
votes
2
answers
157
views
2
answers
Surrogate variables affecting just one sample?
sva written 5 months ago by LluĂ­s R210 • updated 5 months ago by Jeff Leek460
0
votes
1
answer
355
views
1
answer
0
votes
0
answers
142
views
0
answers
0
votes
0
answers
161
views
0
answers
1
vote
1
answer
245
views
1
answer
1
vote
1
answer
221
views
1
answer
sva :: sva can variable of interest be a matrix itself?
sva matrix variable of ineterest written 6 months ago by reyhan.sonmez0 • updated 6 months ago by Jeff Leek460
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