0
votes
2
answers
92
views
2
answers
Surrogate variables affecting just one sample?
sva written 8 days ago by LluĂ­s R130 • updated 7 days ago by Jeff Leek450
0
votes
1
answer
153
views
1
answer
0
votes
0
answers
44
views
0
answers
0
votes
0
answers
84
views
0
answers
1
vote
1
answer
129
views
1
answer
1
vote
1
answer
133
views
1
answer
6
votes
1
answer
162
views
1
answer
Combining newer/older RNAseq data, batch correcting
rnaseq sva batch effect limma voom written 12 weeks ago by schrist110 • updated 12 weeks ago by Aaron Lun12k
4
votes
1
answer
129
views
1
answer
SVA and proportion of variance explained
sva explained variance svd pca written 12 weeks ago by Mattia10 • updated 12 weeks ago by Jeff Leek450
5
votes
2
answers
140
views
2
answers
Problem using sva with limma for microarray DE analysis
sva limma written 3 months ago by Stane0 • updated 3 months ago by Bernd Klaus420
0
votes
1
answer
128
views
1
answer
surrogate variable analysis using R package "sva"
sva bioinformatics R written 3 months ago by fromhj3040 • updated 3 months ago by Diego Diez700
0
votes
1
answer
377
views
1
answer
SVA package for RRBS - bisulfite methylation data
methylation rrbs batch effect sva written 18 months ago by Gilgi10 • updated 3 months ago by dashbrook10
2
votes
3
answers
160
views
3
answers
0
votes
1
answer
519
views
1
answer
svaseq: how many and which surrogate variables to pick
sva written 17 months ago by nicklesd0 • updated 4 months ago by Jeff Leek450
1
vote
1
answer
200
views
1
answer
2
votes
1
answer
183
views
1
answer
Regarding batch effect in Deseq2 package
sva svaseq deseq2 written 4 months ago by szenitha0 • updated 4 months ago by Michael Love10k
1
vote
1
answer
115
views
1
answer
Batch effect problem using SVA showing problems
sva batch effect combat sva written 5 months ago by amoltej10 • updated 5 months ago by Jeff Leek450
2
votes
1
answer
117
views
1
answer
SVA: Error in svd((dats - rowMeans(dats))) : a dimension is zero
sva written 5 months ago by yi.huang30 • updated 5 months ago by Jeff Leek450
1
vote
1
answer
169
views
1
answer
Paired design, normalisation and batch effects.
eda sva deseq2 rna-seq written 5 months ago by g.atla0 • updated 5 months ago by Bernd Klaus420
0
votes
1
answer
144
views
1
answer
0
votes
1
answer
113
views
1
answer
1
vote
1
answer
226
views
1
answer
PCA of bladderdata ("Batch effects and confounders" tutorial)
sva written 6 months ago by nsakabe10 • updated 6 months ago by Keith Hughitt70
0
votes
1
answer
191
views
1
answer
why my resultsNames(deseq) is not the same as model.matrix ?
rnaseq deseq2 sva written 6 months ago by unique3790 • updated 6 months ago by Michael Love10k
0
votes
2
answers
313
views
2
answers
0
votes
2
answers
720
views
2
answers
Use surrogate variables on DESeq2
sva deseq deseq2 differential gene expression written 17 months ago by aristotele_m10 • updated 7 months ago by szenitha0
0
votes
1
answer
174
views
1
answer
Null model in SVA for patient paired test comparing tumor vs normal
sva paired samples rnaseq written 7 months ago by gumilton0 • updated 7 months ago by Jeff Leek450
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