3
votes
1
answer
74
views
1
answer
2
votes
1
answer
108
views
1
answer
1
vote
1
answer
62
views
1
answer
How to interpret the SVA results
sva combat rna-seq written 4 weeks ago by xie186bioinforcore0 • updated 4 weeks ago by James W. MacDonald43k
1
vote
1
answer
128
views
1
answer
Using SVA with RRBS data
sva rrbs written 6 weeks ago by mrodrigues.fernanda10 • updated 6 weeks ago by Jeff Leek460
0
votes
0
answers
65
views
0
answers
4
votes
1
answer
100
views
1
answer
Adjust for multiple batches using combat
limma sva combat written 7 weeks ago by julia.feichtinger0 • updated 7 weeks ago by Aaron Lun14k
3
votes
1
answer
141
views
1
answer
(batch) corrections of RNA-seq data: integrating LIMMA and SVA
limma sva svaseq written 8 weeks ago by Bogdan460 • updated 8 weeks ago by Aaron Lun14k
3
votes
1
answer
154
views
1
answer
How to normalize chromatin and RNA-Seq data together ?
sva deseq2 combat atac atac-seq written 8 weeks ago by g.atla0 • updated 8 weeks ago by Michael Love11k
0
votes
0
answers
94
views
0
answers
0
votes
1
answer
103
views
1
answer
sva: Parallel execution of sva()-function fails.
sva parallel written 11 weeks ago by maltethodberg20 • updated 11 weeks ago by Martin Morgan ♦♦ 19k
2
votes
1
answer
167
views
1
answer
Hill in P-value distribution for heterogenous ChIP-seq samples
limma edger sva csaw qsmooth written 12 weeks ago by jma199110 • updated 12 weeks ago by Aaron Lun14k
0
votes
2
answers
128
views
2
answers
Surrogate variables affecting just one sample?
sva written 3 months ago by Lluís R210 • updated 3 months ago by Jeff Leek460
0
votes
1
answer
285
views
1
answer
0
votes
0
answers
96
views
0
answers
0
votes
0
answers
128
views
0
answers
1
vote
1
answer
189
views
1
answer
1
vote
1
answer
185
views
1
answer
sva :: sva can variable of interest be a matrix itself?
sva matrix variable of ineterest written 4 months ago by reyhan.sonmez0 • updated 4 months ago by Jeff Leek460
6
votes
1
answer
215
views
1
answer
Combining newer/older RNAseq data, batch correcting
rnaseq limma sva voom batch effect written 6 months ago by schrist110 • updated 6 months ago by Aaron Lun14k
4
votes
1
answer
281
views
1
answer
SVA and proportion of variance explained
sva pca svd explained variance written 6 months ago by Mattia10 • updated 6 months ago by Jeff Leek460
5
votes
2
answers
201
views
2
answers
Problem using sva with limma for microarray DE analysis
limma sva written 6 months ago by Stane0 • updated 6 months ago by Bernd Klaus430
0
votes
1
answer
183
views
1
answer
surrogate variable analysis using R package "sva"
sva R bioinformatics written 6 months ago by fromhj30410 • updated 6 months ago by Diego Diez700
0
votes
1
answer
451
views
1
answer
SVA package for RRBS - bisulfite methylation data
sva methylation batch effect rrbs written 21 months ago by Gilgi10 • updated 6 months ago by dashbrook10
2
votes
3
answers
241
views
3
answers
0
votes
1
answer
706
views
1
answer
svaseq: how many and which surrogate variables to pick
sva written 20 months ago by nicklesd0 • updated 7 months ago by Jeff Leek460
1
vote
1
answer
259
views
1
answer
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