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Is it possible to use DESeq2 likelihood ratio test for time-course analysis to analyse MNase-Seq data?
timecourse deseq2 mnase-seq written 25 days ago by santos.migueldm • 0 • updated 23 days ago by Michael Love ♦ 22k
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Timecourse gene expression analysis with DESeq2
timecourse deseq2 multiple factor design lrt written 4 months ago by juditkovacsbio • 0 • updated 4 months ago by Michael Love ♦ 22k
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RNA-seq time course experiment - LRT design hep
timecourse deseq2 lrt written 7 months ago by Maithê Barros • 10
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Time Series Analysis
timecourse deseq2 written 8 months ago by CE • 10 • updated 8 months ago by Michael Love ♦ 22k
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Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
timecourse differential gene expression edge interaction written 8 months ago by rubi • 90
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time series RNA-seq allowing time offset between individuals
timecourse edger deseq2 rna-seq fittimeseries written 8 months ago by jpsf • 0 • updated 8 months ago by Aaron Lun • 23k
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Analysis Time course data using DESeq2
timecourse deseq2 multiple time points time-series written 9 months ago by zhangfei-123 • 0 • updated 9 months ago by Michael Love ♦ 22k
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DESeq2 for time series using time as continuous and looking at effect of time on DE
timecourse deseq2 multiple time points michael love mlr written 9 months ago by ap874 • 0 • updated 9 months ago by Michael Love ♦ 22k
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another contrast question - edgeR + scRNA-seq + timecourse
timecourse edger design and contrast matrix single cell written 10 months ago by regan.hayward • 0 • updated 10 months ago by Gordon Smyth ♦ 37k
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How to perform time-course differential expression with "erroneous" baseline in edgeR?
timecourse edger differential expression written 14 months ago by Enzo Castillejos • 0 • updated 14 months ago by Gordon Smyth ♦ 37k
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Standard error of log2FC from DESeq in time series experiment
timecourse deseq2 log2fc standard error written 14 months ago by Verena • 0 • updated 14 months ago by ellascottgm • 0
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Understanding NextMaSigPro, regression fit and stepwise regression
rnaseq timecourse masigpro written 16 months ago by jelisaveta.jeki.djordjevic • 0
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edgeR: multi-subject time series analysis
timecourse edger multiple groups written 16 months ago by BharathAnanth • 70 • updated 16 months ago by Aaron Lun • 23k
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How is the within-subject correlation modeled in time course experiments in DESeq2
timecourse deseq2 written 16 months ago by Roula • 0 • updated 16 months ago by Wolfgang Huber ♦ 13k
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GLM model on time course analysis and removing the outliers in Deseq2
timecourse deseq2 glm written 2.3 years ago by rahel14350 • 10 • updated 17 months ago by Michael Love ♦ 22k
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Time course experiments
timecourse deseq2 written 18 months ago by uu2110 • 0
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What's the criteria used by DESeq2 to calculate log2 fold changes in time-course experiments?
timecourse deseq2 written 18 months ago by santos.migueldm • 0 • updated 18 months ago by Gavin Kelly • 560
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Time course analysis in DESeq2: handling common baseline for two experimental conditions
timecourse deseq2 differential gene expression multiple factor design rnaseq analysis written 19 months ago by c.nicole • 30 • updated 19 months ago by Gavin Kelly • 560
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edgeR: How to set model for glmQLFTest in time-course experiment (compared to glmLRT?
timecourse edger model edger "glmqlftest()" written 20 months ago by heikki.sarin • 0 • updated 20 months ago by Ryan C. Thompson ♦ 7.3k
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How construct a model for case-control time-course experiment in DEXseq?
timecourse dexseq model model.matrix written 21 months ago by heikki.sarin • 0
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deseq2 complex time course data with out replicates
rnaseq timecourse deseq2 written 21 months ago by novicebioinforesearcher • 0 • updated 21 months ago by Gavin Kelly • 560
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DEseq2 time-series before and after Infection
timecourse deseq2 multiple factor design written 21 months ago by Bio_Ram • 0 • updated 21 months ago by Michael Love ♦ 22k
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DESeq2 time series tissue specific differences over time
rnaseq timecourse deseq2 multiple time points written 21 months ago by Nicholas Owen • 0
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Time-course analysis with limma for >3 time points
timecourse limma design matrix multiple time points contrast matrix written 22 months ago by relathman • 0 • updated 22 months ago by James W. MacDonald ♦ 49k
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DESeq2 time series analysis
timecourse deseq2 multiple time points time written 22 months ago by ofonov • 0 • updated 22 months ago by Michael Love ♦ 22k
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