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2
votes
1
answer
65
views
1
answer
another contrast question - edgeR + scRNA-seq + timecourse
timecourse edger design and contrast matrix single cell written 29 days ago by regan.hayward • 0 • updated 29 days ago by Gordon Smyth ♦ 33k
1
vote
1
answer
228
views
1
answer
How to perform time-course differential expression with "erroneous" baseline in edgeR?
timecourse edger differential expression written 4 months ago by Enzo Castillejos • 0 • updated 4 months ago by Gordon Smyth ♦ 33k
2
votes
1
answer
173
views
1
answer
Standard error of log2FC from DESeq in time series experiment
timecourse deseq2 log2fc standard error written 4 months ago by Verena • 0 • updated 4 months ago by ellascottgm • 0
0
votes
0
answers
185
views
0
answers
Understanding NextMaSigPro, regression fit and stepwise regression
rnaseq timecourse masigpro written 6 months ago by jelisaveta.jeki.djordjevic • 0
0
votes
1
answer
230
views
1
answer
edgeR: multi-subject time series analysis
timecourse edger multiple groups written 6 months ago by BharathAnanth • 10 • updated 6 months ago by Aaron Lun • 19k
0
votes
1
answer
203
views
1
answer
How is the within-subject correlation modeled in time course experiments in DESeq2
timecourse deseq2 written 6 months ago by Roula • 0 • updated 6 months ago by Wolfgang Huber ♦ 13k
4
votes
1
answer
516
views
1
answer
GLM model on time course analysis and removing the outliers in Deseq2
timecourse deseq2 glm written 17 months ago by rahel14350 • 10 • updated 7 months ago by Michael Love ♦ 18k
0
votes
1
answer
196
views
1
answer
Time course experiments
timecourse deseq2 written 8 months ago by uu2110 • 0
1
vote
1
answer
169
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1
answer
What's the criteria used by DESeq2 to calculate log2 fold changes in time-course experiments?
timecourse deseq2 written 8 months ago by santos.migueldm • 0 • updated 8 months ago by Gavin Kelly • 550
4
votes
1
answer
293
views
1
answer
Time course analysis in DESeq2: handling common baseline for two experimental conditions
timecourse deseq2 differential gene expression multiple factor design rnaseq analysis written 9 months ago by c.nicole • 30 • updated 9 months ago by Gavin Kelly • 550
4
votes
1
answer
638
views
1
answer
edgeR: How to set model for glmQLFTest in time-course experiment (compared to glmLRT?
timecourse edger model edger "glmqlftest()" written 10 months ago by heikki.sarin • 0 • updated 10 months ago by Ryan C. Thompson ♦ 6.8k
0
votes
0
answers
434
views
0
answers
How construct a model for case-control time-course experiment in DEXseq?
timecourse dexseq model model.matrix written 11 months ago by heikki.sarin • 0
3
votes
2
answers
547
views
2
answers
deseq2 complex time course data with out replicates
rnaseq timecourse deseq2 written 11 months ago by novicebioinforesearcher • 0 • updated 11 months ago by Gavin Kelly • 550
2
votes
1
answer
194
views
1
answer
DEseq2 time-series before and after Infection
timecourse deseq2 multiple factor design written 11 months ago by Bio_Ram • 0 • updated 11 months ago by Michael Love ♦ 18k
2
votes
1
answer
245
views
1
answer
DESeq2 time series tissue specific differences over time
rnaseq timecourse deseq2 multiple time points written 11 months ago by Nicholas Owen • 0
0
votes
1
answer
206
views
1
answer
Time-course analysis with limma for >3 time points
timecourse limma design matrix multiple time points contrast matrix written 12 months ago by relathman • 0 • updated 12 months ago by James W. MacDonald ♦ 46k
3
votes
1
answer
1.2k
views
1
answer
DESeq2 time series analysis
timecourse deseq2 multiple time points time written 12 months ago by ofonov • 0 • updated 12 months ago by Michael Love ♦ 18k
4
votes
2
answers
492
views
2
answers
Timecourse Differential expression with multiple factors
timecourse edger deseq2 written 15 months ago by anna_stavrinides • 0
4
votes
1
answer
369
views
1
answer
Multi-factorial design for patient-replicates from different time points (Deseq2)
rnaseq timecourse deseq2 multifactorial design multiple time points written 16 months ago by alva.james • 0 • updated 16 months ago by Michael Love ♦ 18k
1
vote
2
answers
1.0k
views
2
answers
Time-series Analysis using DESeq2 and LRT test
timecourse deseq2 lrt written 16 months ago by Assa Yeroslaviz • 1.4k
7
votes
2
answers
493
views
2
answers
Which is the best design matrix to compare a timecourse between two conditions?
timecourse limma voom design matrix written 16 months ago by Camila Orellana • 10 • updated 16 months ago by Gordon Smyth ♦ 33k
0
votes
1
answer
336
views
1
answer
DESeq2 analysis for RNAseq data at different time points and different conditions
rnaseq timecourse deseq2 written 18 months ago by chudar.chudar • 0 • updated 18 months ago by Michael Love ♦ 18k
1
vote
3
answers
510
views
3
answers
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
timecourse limma edger voom without replicate written 19 months ago by Camila Orellana • 10
2
votes
1
answer
564
views
1
answer
Deseq2 time series question,
rnaseq timecourse deseq2 written 19 months ago by cannedcanary • 0 • updated 19 months ago by Michael Love ♦ 18k
1
vote
1
answer
383
views
1
answer
edgeR time series DMSO correction
timecourse edger makecontrasts written 19 months ago by aec • 40 • updated 19 months ago by Ryan C. Thompson ♦ 6.8k
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