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2
votes
1
answer
82
views
1
answer
RNA-seq time course experiment - LRT design hep
timecourse deseq2 lrt written 4 weeks ago by Maithê Barros • 0
0
votes
1
answer
115
views
1
answer
Time Series Analysis
timecourse deseq2 written 9 weeks ago by CE • 10 • updated 9 weeks ago by Michael Love ♦ 19k
0
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0
answers
66
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0
answers
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
timecourse differential gene expression edge interaction written 9 weeks ago by rubi • 90
0
votes
1
answer
99
views
1
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time series RNA-seq allowing time offset between individuals
timecourse edger deseq2 rna-seq fittimeseries written 11 weeks ago by jpsf • 0 • updated 11 weeks ago by Aaron Lun • 21k
1
vote
1
answer
133
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1
answer
Analysis Time course data using DESeq2
timecourse deseq2 multiple time points time-series written 3 months ago by zhangfei-123 • 0 • updated 3 months ago by Michael Love ♦ 19k
2
votes
1
answer
156
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1
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DESeq2 for time series using time as continuous and looking at effect of time on DE
timecourse deseq2 multiple time points michael love mlr written 3 months ago by ap874 • 0 • updated 3 months ago by Michael Love ♦ 19k
2
votes
1
answer
120
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1
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another contrast question - edgeR + scRNA-seq + timecourse
timecourse edger design and contrast matrix single cell written 4 months ago by regan.hayward • 0 • updated 4 months ago by Gordon Smyth ♦ 35k
1
vote
1
answer
320
views
1
answer
How to perform time-course differential expression with "erroneous" baseline in edgeR?
timecourse edger differential expression written 8 months ago by Enzo Castillejos • 0 • updated 8 months ago by Gordon Smyth ♦ 35k
2
votes
1
answer
205
views
1
answer
Standard error of log2FC from DESeq in time series experiment
timecourse deseq2 log2fc standard error written 8 months ago by Verena • 0 • updated 8 months ago by ellascottgm • 0
0
votes
0
answers
224
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0
answers
Understanding NextMaSigPro, regression fit and stepwise regression
rnaseq timecourse masigpro written 10 months ago by jelisaveta.jeki.djordjevic • 0
0
votes
1
answer
299
views
1
answer
edgeR: multi-subject time series analysis
timecourse edger multiple groups written 10 months ago by BharathAnanth • 30 • updated 10 months ago by Aaron Lun • 21k
0
votes
1
answer
236
views
1
answer
How is the within-subject correlation modeled in time course experiments in DESeq2
timecourse deseq2 written 10 months ago by Roula • 0 • updated 10 months ago by Wolfgang Huber ♦ 13k
4
votes
1
answer
613
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1
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GLM model on time course analysis and removing the outliers in Deseq2
timecourse deseq2 glm written 21 months ago by rahel14350 • 10 • updated 11 months ago by Michael Love ♦ 19k
0
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1
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254
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1
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Time course experiments
timecourse deseq2 written 11 months ago by uu2110 • 0
1
vote
1
answer
238
views
1
answer
What's the criteria used by DESeq2 to calculate log2 fold changes in time-course experiments?
timecourse deseq2 written 12 months ago by santos.migueldm • 0 • updated 12 months ago by Gavin Kelly • 560
4
votes
1
answer
408
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1
answer
Time course analysis in DESeq2: handling common baseline for two experimental conditions
timecourse deseq2 differential gene expression multiple factor design rnaseq analysis written 12 months ago by c.nicole • 30 • updated 12 months ago by Gavin Kelly • 560
4
votes
1
answer
710
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1
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edgeR: How to set model for glmQLFTest in time-course experiment (compared to glmLRT?
timecourse edger model edger "glmqlftest()" written 14 months ago by heikki.sarin • 0 • updated 14 months ago by Ryan C. Thompson ♦ 6.9k
0
votes
0
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474
views
0
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How construct a model for case-control time-course experiment in DEXseq?
timecourse dexseq model model.matrix written 14 months ago by heikki.sarin • 0
3
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2
answers
639
views
2
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deseq2 complex time course data with out replicates
rnaseq timecourse deseq2 written 15 months ago by novicebioinforesearcher • 0 • updated 15 months ago by Gavin Kelly • 560
2
votes
1
answer
235
views
1
answer
DEseq2 time-series before and after Infection
timecourse deseq2 multiple factor design written 15 months ago by Bio_Ram • 0 • updated 15 months ago by Michael Love ♦ 19k
2
votes
1
answer
295
views
1
answer
DESeq2 time series tissue specific differences over time
rnaseq timecourse deseq2 multiple time points written 15 months ago by Nicholas Owen • 0
0
votes
1
answer
291
views
1
answer
Time-course analysis with limma for >3 time points
timecourse limma design matrix multiple time points contrast matrix written 15 months ago by relathman • 0 • updated 15 months ago by James W. MacDonald ♦ 48k
3
votes
1
answer
1.8k
views
1
answer
DESeq2 time series analysis
timecourse deseq2 multiple time points time written 15 months ago by ofonov • 0 • updated 15 months ago by Michael Love ♦ 19k
4
votes
2
answers
608
views
2
answers
Timecourse Differential expression with multiple factors
timecourse edger deseq2 written 19 months ago by anna_stavrinides • 0
4
votes
1
answer
433
views
1
answer
Multi-factorial design for patient-replicates from different time points (Deseq2)
rnaseq timecourse deseq2 multifactorial design multiple time points written 19 months ago by alva.james • 0 • updated 19 months ago by Michael Love ♦ 19k
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