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22
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Time Series Analysis
timecourse deseq2 written 1 day ago by CE • 10 • updated 1 day ago by Michael Love ♦ 19k
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37
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Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
timecourse differential gene expression edge interaction written 3 days ago by rubi • 90
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58
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time series RNA-seq allowing time offset between individuals
timecourse edger deseq2 rna-seq fittimeseries written 15 days ago by jpsf • 0 • updated 15 days ago by Aaron Lun • 20k
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98
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Analysis Time course data using DESeq2
timecourse deseq2 multiple time points time-series written 5 weeks ago by zhangfei-123 • 0 • updated 5 weeks ago by Michael Love ♦ 19k
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105
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DESeq2 for time series using time as continuous and looking at effect of time on DE
timecourse deseq2 multiple time points michael love mlr written 7 weeks ago by ap874 • 0 • updated 7 weeks ago by Michael Love ♦ 19k
2
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87
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1
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another contrast question - edgeR + scRNA-seq + timecourse
timecourse edger design and contrast matrix single cell written 11 weeks ago by regan.hayward • 0 • updated 11 weeks ago by Gordon Smyth ♦ 34k
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259
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How to perform time-course differential expression with "erroneous" baseline in edgeR?
timecourse edger differential expression written 6 months ago by Enzo Castillejos • 0 • updated 6 months ago by Gordon Smyth ♦ 34k
2
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185
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1
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Standard error of log2FC from DESeq in time series experiment
timecourse deseq2 log2fc standard error written 6 months ago by Verena • 0 • updated 6 months ago by ellascottgm • 0
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198
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Understanding NextMaSigPro, regression fit and stepwise regression
rnaseq timecourse masigpro written 8 months ago by jelisaveta.jeki.djordjevic • 0
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1
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254
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edgeR: multi-subject time series analysis
timecourse edger multiple groups written 8 months ago by BharathAnanth • 30 • updated 8 months ago by Aaron Lun • 20k
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219
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1
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How is the within-subject correlation modeled in time course experiments in DESeq2
timecourse deseq2 written 8 months ago by Roula • 0 • updated 8 months ago by Wolfgang Huber ♦ 13k
4
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555
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GLM model on time course analysis and removing the outliers in Deseq2
timecourse deseq2 glm written 19 months ago by rahel14350 • 10 • updated 9 months ago by Michael Love ♦ 19k
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221
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Time course experiments
timecourse deseq2 written 9 months ago by uu2110 • 0
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206
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What's the criteria used by DESeq2 to calculate log2 fold changes in time-course experiments?
timecourse deseq2 written 10 months ago by santos.migueldm • 0 • updated 10 months ago by Gavin Kelly • 550
4
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1
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340
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Time course analysis in DESeq2: handling common baseline for two experimental conditions
timecourse deseq2 differential gene expression multiple factor design rnaseq analysis written 10 months ago by c.nicole • 30 • updated 10 months ago by Gavin Kelly • 550
4
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1
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662
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edgeR: How to set model for glmQLFTest in time-course experiment (compared to glmLRT?
timecourse edger model edger "glmqlftest()" written 12 months ago by heikki.sarin • 0 • updated 12 months ago by Ryan C. Thompson ♦ 6.8k
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449
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How construct a model for case-control time-course experiment in DEXseq?
timecourse dexseq model model.matrix written 12 months ago by heikki.sarin • 0
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deseq2 complex time course data with out replicates
rnaseq timecourse deseq2 written 12 months ago by novicebioinforesearcher • 0 • updated 12 months ago by Gavin Kelly • 550
2
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1
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212
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1
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DEseq2 time-series before and after Infection
timecourse deseq2 multiple factor design written 13 months ago by Bio_Ram • 0 • updated 13 months ago by Michael Love ♦ 19k
2
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1
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268
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1
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DESeq2 time series tissue specific differences over time
rnaseq timecourse deseq2 multiple time points written 13 months ago by Nicholas Owen • 0
0
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1
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244
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Time-course analysis with limma for >3 time points
timecourse limma design matrix multiple time points contrast matrix written 13 months ago by relathman • 0 • updated 13 months ago by James W. MacDonald ♦ 47k
3
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1
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1.5k
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1
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DESeq2 time series analysis
timecourse deseq2 multiple time points time written 13 months ago by ofonov • 0 • updated 13 months ago by Michael Love ♦ 19k
4
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2
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523
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2
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Timecourse Differential expression with multiple factors
timecourse edger deseq2 written 17 months ago by anna_stavrinides • 0
4
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1
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386
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1
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Multi-factorial design for patient-replicates from different time points (Deseq2)
rnaseq timecourse deseq2 multifactorial design multiple time points written 17 months ago by alva.james • 0 • updated 17 months ago by Michael Love ♦ 19k
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2
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Time-series Analysis using DESeq2 and LRT test
timecourse deseq2 lrt written 18 months ago by Assa Yeroslaviz • 1.4k
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