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DESeq2 time course with two genotypes
timecourse deseq2 multiple time points michael love written 10 weeks ago by cp1015 • 0
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DEseq2 time-series design.
timecourse deseq2 design written 5.1 years ago by shao • 80 • updated 5 months ago by simon baldwin • 0
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Is it possible to use DESeq2 likelihood ratio test for time-course analysis to analyse MNase-Seq data?
timecourse deseq2 mnase-seq written 8 months ago by santos.migueldm • 0 • updated 8 months ago by Michael Love ♦ 26k
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Timecourse gene expression analysis with DESeq2
timecourse deseq2 multiple factor design lrt written 12 months ago by juditkovacsbio • 0 • updated 12 months ago by Michael Love ♦ 26k
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RNA-seq time course experiment - LRT design hep
timecourse deseq2 lrt written 15 months ago by Maithê Barros • 10
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Time Series Analysis
timecourse deseq2 written 16 months ago by CE • 10 • updated 16 months ago by Michael Love ♦ 26k
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Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
timecourse differential gene expression edge interaction written 16 months ago by rubi • 90
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280
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time series RNA-seq allowing time offset between individuals
timecourse edger deseq2 rna-seq fittimeseries written 16 months ago by jpsf • 0 • updated 16 months ago by Aaron Lun • 25k
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Analysis Time course data using DESeq2
timecourse deseq2 multiple time points time-series written 17 months ago by zhangfei-123 • 0 • updated 17 months ago by Michael Love ♦ 26k
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DESeq2 for time series using time as continuous and looking at effect of time on DE
timecourse deseq2 multiple time points michael love mlr written 17 months ago by ap874 • 0 • updated 17 months ago by Michael Love ♦ 26k
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another contrast question - edgeR + scRNA-seq + timecourse
timecourse edger design and contrast matrix single cell written 18 months ago by regan.hayward • 0 • updated 18 months ago by Gordon Smyth ♦ 39k
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How to perform time-course differential expression with "erroneous" baseline in edgeR?
timecourse edger differential expression written 22 months ago by Enzo Castillejos • 0 • updated 22 months ago by Gordon Smyth ♦ 39k
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Standard error of log2FC from DESeq in time series experiment
timecourse deseq2 log2fc standard error written 22 months ago by Verena • 0 • updated 22 months ago by ellascottgm • 0
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Understanding NextMaSigPro, regression fit and stepwise regression
rnaseq timecourse masigpro written 2.0 years ago by jelisaveta.jeki.djordjevic • 0
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edgeR: multi-subject time series analysis
timecourse edger multiple groups written 2.0 years ago by BharathAnanth • 70 • updated 2.0 years ago by Aaron Lun • 25k
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How is the within-subject correlation modeled in time course experiments in DESeq2
timecourse deseq2 written 2.0 years ago by Roula • 0 • updated 2.0 years ago by Wolfgang Huber ♦ 13k
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GLM model on time course analysis and removing the outliers in Deseq2
timecourse deseq2 glm written 2.9 years ago by rahel14350 • 10 • updated 2.1 years ago by Michael Love ♦ 26k
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Time course experiments
timecourse deseq2 written 2.1 years ago by uu2110 • 0
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What's the criteria used by DESeq2 to calculate log2 fold changes in time-course experiments?
timecourse deseq2 written 2.2 years ago by santos.migueldm • 0 • updated 2.2 years ago by Gavin Kelly • 570
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Time course analysis in DESeq2: handling common baseline for two experimental conditions
timecourse deseq2 differential gene expression multiple factor design rnaseq analysis written 2.2 years ago by c.nicole • 50 • updated 2.2 years ago by Gavin Kelly • 570
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edgeR: How to set model for glmQLFTest in time-course experiment (compared to glmLRT?
timecourse edger model edger "glmqlftest()" written 2.4 years ago by heikki.sarin • 0 • updated 2.4 years ago by Ryan C. Thompson ♦ 7.4k
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How construct a model for case-control time-course experiment in DEXseq?
timecourse dexseq model model.matrix written 2.4 years ago by heikki.sarin • 0
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deseq2 complex time course data with out replicates
rnaseq timecourse deseq2 written 2.4 years ago by novicebioinforesearcher • 0 • updated 2.4 years ago by Gavin Kelly • 570
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387
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DEseq2 time-series before and after Infection
timecourse deseq2 multiple factor design written 2.4 years ago by Bio_Ram • 0 • updated 2.4 years ago by Michael Love ♦ 26k
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DESeq2 time series tissue specific differences over time
rnaseq timecourse deseq2 multiple time points written 2.4 years ago by Nicholas Owen • 0
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