1
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1
reply
150
views
DESeq2 time course analysis
DESeq2 Timecourse
5 weeks ago K. • 0 • updated 5 weeks ago Michael Love 32k
18
votes
24
replies
9.2k
views
[DESeq2] time series strain-specific differences over time
deseq2 timecourse
6.0 years ago john • 100 • updated 18 days ago ethicalhackers • 0
1
vote
1
reply
108
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DESeq2 timecourse experiments
deseq2 timecourse
5 months ago sconosciuto • 0 • updated 5 months ago Michael Love 32k
0
votes
3
replies
96
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RNA seq time course design using DESeq2
deseq2 timecourse
5 months ago jackiesalzbank • 0 • updated 5 months ago Michael Love 32k
0
votes
2
replies
67
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maSigPro Influential genes, step.methods and gene removal
maSigPro TimeCourse
8 months ago DcL-A • 0 • updated 8 months ago Michael Love 32k
2
votes
3
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69
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Drug response pre- and post-treatment between timepoints across conditions
RNA-seq Paired design Timecourse Diagnosis Covariates
11 months ago ibrahim.akkouh • 0 • updated 11 months ago Kevin Blighe 2.5k
0
votes
3
replies
163
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DESeq2 time course with two genotypes
deseq2 timecourse michael love multiple time points
17 months ago cp1015 • 0
2
votes
18
replies
15k
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DEseq2 time-series design.
deseq2 timecourse design
6.3 years ago shao • 90 • updated 20 months ago simon baldwin • 0
0
votes
3
replies
228
views
Is it possible to use DESeq2 likelihood ratio test for time-course analysis to analyse MNase-Seq data?
timecourse mnase-seq deseq2
23 months ago santos.migueldm • 0 • updated 23 months ago Michael Love 32k
1
vote
5
replies
511
views
Timecourse gene expression analysis with DESeq2
timecourse deseq2 multiple factor design LRT
2.2 years ago juditkovacsbio • 0 • updated 2.2 years ago Michael Love 32k
2
votes
4
replies
415
views
RNA-seq time course experiment - LRT design hep
deseq2 lrt timecourse
2.4 years ago Maithê Barros • 10
0
votes
1
reply
396
views
Time Series Analysis
timecourse deseq2
2.5 years ago CE • 10 • updated 2.5 years ago Michael Love 32k
0
votes
0
replies
292
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge differential gene expression timecourse interaction
2.5 years ago rubi • 90
0
votes
3
replies
311
views
time series RNA-seq allowing time offset between individuals
edgeR deseq2 rna-seq timecourse fittimeseries
2.6 years ago jpsf • 0 • updated 2.6 years ago Aaron Lun ♦ 26k
1
vote
4
replies
434
views
Analysis Time course data using DESeq2
deseq2 timecourse multiple time points time-series
2.6 years ago zhangfei-123 • 0 • updated 2.6 years ago Michael Love 32k
2
votes
3
replies
468
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2 timecourse multiple time points mlr michael love
2.7 years ago ap874 • 0 • updated 2.7 years ago Michael Love 32k
2
votes
2
replies
418
views
another contrast question - edgeR + scRNA-seq + timecourse
edger single cell design and contrast matrix timecourse
2.8 years ago regan.hayward • 0 • updated 2.8 years ago Gordon Smyth 42k
1
vote
4
replies
865
views
How to perform time-course differential expression with "erroneous" baseline in edgeR?
edger differential expression timecourse
3.0 years ago Enzo Castillejos • 0 • updated 3.0 years ago Gordon Smyth 42k
2
votes
4
replies
474
views
Standard error of log2FC from DESeq in time series experiment
deseq2 log2fc standard error timecourse
3.0 years ago Verena • 0 • updated 3.0 years ago ellascottgm • 0
0
votes
0
replies
463
views
Understanding NextMaSigPro, regression fit and stepwise regression
timecourse rnaseq masigpro
3.2 years ago jelisaveta.jeki.djordjevic • 0
0
votes
8
replies
694
views
edgeR: multi-subject time series analysis
timecourse multiple groups edgeR
3.2 years ago BharathAnanth • 70 • updated 3.2 years ago Aaron Lun ♦ 26k
0
votes
3
replies
453
views
How is the within-subject correlation modeled in time course experiments in DESeq2
deseq2 timecourse
3.3 years ago Roula • 0 • updated 3.2 years ago Wolfgang Huber 13k
4
votes
7
replies
1.3k
views
GLM model on time course analysis and removing the outliers in Deseq2
deseq2 GLM timecourse
4.2 years ago rahel14350 • 10 • updated 3.3 years ago Michael Love 32k
0
votes
8
replies
593
views
Time course experiments
deseq2 timecourse
3.3 years ago uu2110 • 0
1
vote
2
replies
642
views
What's the criteria used by DESeq2 to calculate log2 fold changes in time-course experiments?
deseq2 timecourse
3.4 years ago santos.migueldm • 0 • updated 3.4 years ago Gavin Kelly • 570
6
votes
19
replies
1.4k
views
Time course analysis in DESeq2: handling common baseline for two experimental conditions
deseq2 timecourse multiple factor design RNAseq analysis differential gene expression
3.4 years ago c.nicole • 50 • updated 3.4 years ago Gavin Kelly • 570
4
votes
8
replies
1.0k
views
edgeR: How to set model for glmQLFTest in time-course experiment (compared to glmLRT?
edgeR edger "glmqlftest()" timecourse model
3.6 years ago heikki.sarin • 0 • updated 3.6 years ago Ryan C. Thompson 7.6k
0
votes
0
replies
692
views
How construct a model for case-control time-course experiment in DEXseq?
dexseq timecourse model.matrix model
3.6 years ago heikki.sarin • 0
3
votes
7
replies
1.2k
views
deseq2 complex time course data with out replicates
deseq2 timecourse rnaseq
3.6 years ago novicebioinforesearcher • 0 • updated 3.6 years ago Gavin Kelly • 570
2
votes
1
reply
427
views
DEseq2 time-series before and after Infection
multiple factor design deseq2 timecourse
3.6 years ago Bio_Ram • 0 • updated 3.6 years ago Michael Love 32k
2
votes
5
replies
685
views
DESeq2 time series tissue specific differences over time
deseq2 timecourse multiple time points rnaseq
3.6 years ago Nicholas Owen • 0
0
votes
1
reply
1.2k
views
Time-course analysis with limma for >3 time points
limma contrast matrix design matrix multiple time points timecourse
3.7 years ago relathman • 20 • updated 3.7 years ago James W. MacDonald 56k
7
votes
9
replies
4.9k
views
DESeq2 time series analysis
DESEQ2 timecourse multiple time points time
3.7 years ago ofonov • 10 • updated 3.7 years ago Michael Love 32k
4
votes
6
replies
994
views
Timecourse Differential expression with multiple factors
deseq2 edger timecourse
4.0 years ago • updated 3.9 years ago anna_stavrinides • 20
4
votes
6
replies
748
views
Multi-factorial design for patient-replicates from different time points (Deseq2)
deseq2 rnaseq timecourse multiple time points multifactorial design
4.0 years ago alva.james • 0 • updated 4.0 years ago Michael Love 32k
1
vote
9
replies
2.2k
views
Time-series Analysis using DESeq2 and LRT test
deseq2 LRT timecourse
4.1 years ago • updated 4.0 years ago Assa Yeroslaviz ♦ 1.5k
7
votes
5
replies
824
views
Which is the best design matrix to compare a timecourse between two conditions?
limma voom design matrix timecourse
4.1 years ago Camila Orellana • 10 • updated 4.1 years ago Gordon Smyth 42k
0
votes
1
reply
836
views
DESeq2 analysis for RNAseq data at different time points and different conditions
deseq2 timecourse rnaseq
4.2 years ago chudar.chudar • 0 • updated 4.2 years ago Michael Love 32k
1
vote
5
replies
1.1k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
4.3 years ago Camila Orellana • 10
2
votes
3
replies
989
views
Deseq2 time series question,
rnaseq deseq2 timecourse
4.3 years ago cannedcanary • 0 • updated 4.3 years ago Michael Love 32k
1
vote
6
replies
621
views
edgeR time series DMSO correction
edger makecontrasts timecourse
4.3 years ago aec • 70 • updated 4.3 years ago Ryan C. Thompson 7.6k
2
votes
2
replies
708
views
DESeq2 design matrix for timecourse
deseq2 experimental design timecourse rnaseq model
4.3 years ago axel.thieffry • 10 • updated 4.3 years ago Michael Love 32k
2
votes
3
replies
2.3k
views
Analysis of RNA-seq time series with edgeR
edger rna-seq differential expression timecourse time course
4.3 years ago Francesca • 0 • updated 4.3 years ago Aaron Lun ♦ 26k
2
votes
2
replies
623
views
rlog transformation for Time-course data
deseq2 rlog transformation timecourse rnaseq
4.4 years ago veigh09 • 0 • updated 4.4 years ago Michael Love 32k
0
votes
1
reply
671
views
expression profiles between DESeq2 and Mfuzz
deseq2 mfuzz differential expression timecourse
4.4 years ago Assa Yeroslaviz ♦ 1.5k • updated 4.4 years ago Michael Love 32k
0
votes
0
replies
396
views
How to get differentially expressed genes in "timecourse" package ?
timecourse differential gene expression
4.5 years ago moradzadeh_k921 • 0
0
votes
0
replies
410
views
Block design for maSigPro
masigpro timecourse
4.5 years ago sanj • 20
0
votes
1
reply
2.4k
views
DESeq2 time series
deseq2 timecourse
4.7 years ago pavel.abaffy • 0 • updated 4.7 years ago Michael Love 32k
0
votes
0
replies
472
views
Data adjustment requirements for input in time-course BETR analysis
betr timecourse
4.7 years ago Quang Nguyen • 0
1
vote
1
reply
4.4k
views
Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz clustering bioinformatics proteomics timecourse
5.0 years ago under-waterworld • 0 • updated 5.0 years ago Laurent Gatto 1.4k
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