1
vote
0
answers
184
views
0
answers
1
vote
2
answers
649
views
2
answers
'version' is missing error when running makeTxDbPackageFromUCSC
cancer transcriptdb iranges genomicfeatures written 4.4 years ago by Hervé Pagès ♦♦ 13k • updated 2.2 years ago by dave10
6
votes
1
answer
2.3k
views
1
answer
Get sequences for GRCh38 genome based on TxDb object locations
bsgenome transcriptdb genomeinfodb written 3.1 years ago by Diego Diez710 • updated 3.1 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
472
views
1
answer
BugReports: bug with runValue (strand (GRangesList))
transcriptdb written 3.2 years ago by Robert K. Bradley40 • updated 3.2 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
871
views
1
answer
Error running makeTranscriptDbFromGFF in GenomicFeatures
genetics transcriptdb genomicfeatures written 3.4 years ago by Jon Bråte130 • updated 3.4 years ago by Michael Lawrence9.8k
0
votes
0
answers
672
views
0
answers
0
votes
2
answers
1.1k
views
2
answers
Genomic Features - makeTranscriptDbFromGFF()
organism transcriptdb genomicfeatures written 3.6 years ago by Guest User12k • updated 3.6 years ago by Marc Carlson7.2k
0
votes
1
answer
590
views
1
answer
2
votes
7
answers
837
views
7
answers
ggbio 1.12.0 autoplot() with txdb example is broken
transcriptdb written 3.7 years ago by Leonardo Collado Torres590 • updated 3.7 years ago by Tengfei Yin490
0
votes
1
answer
623
views
1
answer
Extracting strand information from GenomicFeatures transcript db objects
transcriptdb biomart written 3.9 years ago by Veerendra GP100 • updated 3.9 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
620
views
1
answer
Error in combining GRanges objects into GRangesList object
transcriptdb written 3.9 years ago by Kalyan K Pasumarthy10 • updated 3.9 years ago by Michael Lawrence9.8k
0
votes
1
answer
862
views
1
answer
makeTranscriptDbFromUCSC
transcriptdb written 4.0 years ago by Georg Otto120
0
votes
1
answer
425
views
1
answer
0
votes
1
answer
537
views
1
answer
0
votes
0
answers
921
views
0
answers
0
votes
0
answers
855
views
0
answers
0
votes
1
answer
521
views
1
answer
0
votes
1
answer
549
views
1
answer
0
votes
1
answer
657
views
1
answer
autoplot() error on a GRanges object in ggbio 1.10.8
annotation transcriptdb written 4.2 years ago by Leonardo Collado Torres590 • updated 4.2 years ago by Tengfei Yin490
0
votes
1
answer
544
views
1
answer
autoplot transcriptDb error with some regions
transcriptdb biovizbase ggbio written 4.2 years ago by Malcolm Cook1.4k • updated 4.2 years ago by Tengfei Yin490
0
votes
1
answer
1.7k
views
1
answer
Working with ensembl 73 & BSGenome
annotation bsgenome transcriptdb biomart written 4.2 years ago by Guest User12k • updated 4.2 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
671
views
1
answer
makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
go transcriptdb goseq genomes written 4.2 years ago by 刘鹏飞80 • updated 4.2 years ago by Marc Carlson7.2k
0
votes
1
answer
433
views
1
answer
autoplot transcriptDb error with some regions
transcriptdb ggbio written 4.3 years ago by Alejandro Reyes1.5k • updated 4.3 years ago by Tengfei Yin490
0
votes
1
answer
514
views
1
answer
GenomicFeatures- disjointExons error
transcriptdb written 4.3 years ago by Julie Zhu3.8k • updated 4.3 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
488
views
1
answer
'version' is missing error when running makeTxDbPackageFromUCSC
transcriptdb iranges written 4.4 years ago by Michael Steeves40 • updated 4.4 years ago by Dan Tenenbaum ♦♦ 8.2k
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