1
vote
0
answers
335
views
0
answers
1
vote
2
answers
733
views
2
answers
'version' is missing error when running makeTxDbPackageFromUCSC
cancer transcriptdb iranges genomicfeatures written 5.1 years ago by Hervé Pagès ♦♦ 13k • updated 3.0 years ago by dave10
6
votes
1
answer
2.7k
views
1
answer
Get sequences for GRCh38 genome based on TxDb object locations
bsgenome transcriptdb genomeinfodb written 3.8 years ago by Diego Diez730 • updated 3.8 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
523
views
1
answer
BugReports: bug with runValue (strand (GRangesList))
transcriptdb written 3.9 years ago by Robert K. Bradley40 • updated 3.9 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
1.0k
views
1
answer
0
votes
0
answers
922
views
0
answers
0
votes
2
answers
1.2k
views
2
answers
Genomic Features - makeTranscriptDbFromGFF()
organism transcriptdb genomicfeatures written 4.3 years ago by Guest User12k • updated 4.3 years ago by Marc Carlson7.2k
0
votes
1
answer
776
views
1
answer
2
votes
7
answers
1.1k
views
7
answers
ggbio 1.12.0 autoplot() with txdb example is broken
transcriptdb written 4.5 years ago by Leonardo Collado Torres610 • updated 4.5 years ago by Tengfei Yin490
0
votes
1
answer
773
views
1
answer
Extracting strand information from GenomicFeatures transcript db objects
transcriptdb biomart written 4.6 years ago by Veerendra GP100 • updated 4.6 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
830
views
1
answer
Error in combining GRanges objects into GRangesList object
transcriptdb written 4.6 years ago by Kalyan K Pasumarthy10 • updated 4.6 years ago by Michael Lawrence10k
0
votes
1
answer
1.1k
views
1
answer
makeTranscriptDbFromUCSC
transcriptdb written 4.8 years ago by Georg Otto120
0
votes
1
answer
555
views
1
answer
0
votes
1
answer
623
views
1
answer
0
votes
0
answers
1.1k
views
0
answers
0
votes
0
answers
1.0k
views
0
answers
0
votes
1
answer
577
views
1
answer
0
votes
1
answer
660
views
1
answer
0
votes
1
answer
859
views
1
answer
autoplot() error on a GRanges object in ggbio 1.10.8
annotation transcriptdb written 4.9 years ago by Leonardo Collado Torres610 • updated 4.9 years ago by Tengfei Yin490
0
votes
1
answer
689
views
1
answer
autoplot transcriptDb error with some regions
transcriptdb biovizbase ggbio written 5.0 years ago by Malcolm Cook1.5k • updated 5.0 years ago by Tengfei Yin490
0
votes
1
answer
2.0k
views
1
answer
Working with ensembl 73 & BSGenome
annotation bsgenome transcriptdb biomart written 5.0 years ago by Guest User12k • updated 5.0 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
797
views
1
answer
makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
go transcriptdb goseq genomes written 5.0 years ago by 刘鹏飞80 • updated 5.0 years ago by Marc Carlson7.2k
0
votes
1
answer
493
views
1
answer
autoplot transcriptDb error with some regions
transcriptdb ggbio written 5.0 years ago by Alejandro Reyes1.6k • updated 5.0 years ago by Tengfei Yin490
0
votes
1
answer
662
views
1
answer
GenomicFeatures- disjointExons error
transcriptdb written 5.0 years ago by Julie Zhu3.8k • updated 5.0 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
596
views
1
answer
'version' is missing error when running makeTxDbPackageFromUCSC
transcriptdb iranges written 5.1 years ago by Michael Steeves40 • updated 5.1 years ago by Dan Tenenbaum ♦♦ 8.2k
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