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Votes
0
votes
6
replies
156
views
Unexpected gene polymorphism using Salmon-tximeta-DESeq2
tximeta
DESeq2
7 weeks ago • updated 5 weeks ago
Ray
• 0
3
votes
9
replies
272
views
summarizeToGene from tximeta: not all 'rnames' found or unique.
RNA-seq
tximeta
12 weeks ago • updated 10 weeks ago
Pufall, Miles A
• 20
1
vote
9
replies
182
views
Question: Error running summarizeToGene() - RNA Seq Bioconductor pipeline
tximeta
tximport
deseq2
5 months ago
anthony.nash
• 20
• updated 5 months ago
Michael Love
32k
1
vote
1
reply
82
views
Error in importing Salmon quantification to R using tximeta
deseq2
tximeta
7 months ago
June.
• 10
• updated 7 months ago
Michael Love
32k
1
vote
1
reply
74
views
Specifying tx2gene with tximeta
tximeta
tximport
7 months ago
aimee.hanson
• 0
• updated 7 months ago
Michael Love
32k
1
vote
2
replies
87
views
RNA Seq from MusMusculus and HomoSapiens
tximeta
tximport
annotation
7 months ago
guillaume.dachy
• 0
• updated 7 months ago
Michael Love
32k
3
votes
7
replies
101
views
tximeta - problem importing salmon files
tximeta
deseq2
7 months ago
rihards.saksis
• 0
• updated 7 months ago
Michael Love
32k
1
vote
3
replies
120
views
tximeta on STAR-aligned Salmon-quantified output
tximeta
salmon
STAR
9 months ago
josephbrown
• 0
• updated 9 months ago
Michael Love
32k
4
votes
0
replies
318
views
Tutorial:
How to post Salmon data to GEO for use with tximeta
salmon
tximeta
Tutorial
10 months ago
Michael Love
32k
1
vote
2
replies
124
views
Is this an issue? "Error in (function (x) : attempt to apply non-function" when calling tximeta::summarizeToGene(se) for the first time with some da…
software error
tximeta
10 months ago
kalavattam
• 0
• updated 10 months ago
Michael Love
32k
2
votes
12
replies
151
views
BioFileCache Problem and not linking to ensembldb problem in TxiMeta
Tximeta
BioFileCache
Ensembldb
12 months ago
kavator
• 20
• updated 12 months ago
Martin Morgan
25k
0
votes
7
replies
86
views
tximeta doesn't work downloading the ref genome
deseq2
tximeta
tximport
rnaseq
12 months ago
rafaelsolersanblas
• 0
0
votes
2
replies
82
views
Couldn't find matching transcriptome
tximeta
13 months ago
Fei Liu
• 0
• updated 13 months ago
Michael Love
32k
0
votes
6
replies
121
views
DB file sqlite not found
tximeta
sqlite
13 months ago
rama.pranadi
• 0
• updated 13 months ago
Martin Morgan
25k
0
votes
5
replies
116
views
importing salmon rnaseq quant with tximeta
tximeta
salmon
deseq2
13 months ago
omid.alamdari
• 0
2
votes
2
replies
212
views
tximeta error in fetching genome info
rnaseq
tximeta
14 months ago
MT
• 0
• updated 14 months ago
Michael Love
32k
2
votes
11
replies
648
views
Cannot find header.json in salmon index directory
salmon
tximeta
rna-seq
15 months ago
mico
• 0
0
votes
4
replies
106
views
tximeta doesn't match gencode M23 transcripts to gtf
tximeta
15 months ago
jtobias
• 0
• updated 15 months ago
Michael Love
32k
5
votes
6
replies
688
views
How to build and map to a "pre-mRNA" reference transcriptome for single nucleus RNA-seq data?
tximeta
ensembldb
single-cell
snRNA-seq
tximport
16 months ago
Stephanie Hicks
• 80
• updated 16 months ago
Robert Castelo
♦ 2.6k
2
votes
3
replies
287
views
tximport::summarizeToGene fails to ignoreTxVersion
tximport
tximeta
AnnotationDbi
20 months ago
Benjamin
• 0
0
votes
2
replies
184
views
error in addIds
tximeta
22 months ago
anna.sawicka
• 0
2
votes
1
reply
322
views
tximeta remote versus local reference files
tximeta
2.3 years ago
igor
• 40
• updated 2.3 years ago
Michael Love
32k
22 results • Page
1 of 1
Recent ...
Replies
Comment: Same methylation probe ID with different locus annotations in Illumina 27k and 4
by
yuabrahamliu
• 0
Thank you for the reply Kevin. I further checked the sequences of the probes and found something noteworthy. For the 27k package, the seque…
Comment: problem installing ENmix package
by
James W. MacDonald
56k
Will you give the full output that you get when installing?
Comment: problem installing ENmix package
by
lea
• 0
I tried both (with the slashes the other way around), it did not work but I delete the package directly on my file browser and it correctly…
Comment: problem installing ENmix package
by
James W. MacDonald
56k
Ugh. You need to convert the back slashes in the call to `unlink` to forward slashes or R will get all huffy with you.
Comment: problem installing ENmix package
by
James W. MacDonald
56k
Ah, that explains it. When R installs a package, it first creates a directory in your library dir called 00LOCK and does a preliminary inst…
Votes
Comment: DMRcate extractRanges error
Comment: Does hashedDrops support 'imbalanced' combinations of HTOs?
SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
A: Minfi issue: return code from pthread_create() is 22
Answer: DiffBind fragmentSize meaning
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