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Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
by
liuchangbio
▴
10
Hi,
Thank you for your reply.
I have tried to follow the advice you gave, but it still does not work. This does not look like an easy E…
Comment: TCGA: clinical data and expression data
by
sharifnstu1203002m
•
0
Hello, I am in the same problem.
I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Jonathan Göke
▴
40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
by
Gordon Smyth
47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user)
by
lalanis1
•
0
Thanks a lot, Calvo.
Will run my files with revised version soon!
Best regards,
Lalani
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