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Answer: Sva and batch effect
by
James W. MacDonald
62k
You shouldn't be computing regular t-statistics to begin with. In addition, `sva` is intended to adjust for *unobserved variability*, and a…
Answer: Micro Array GEO data analysis
by
James W. MacDonald
62k
You could try getting the RCC files and normalizing yourself, using `getGEOSuppFiles` and the `NanoStringNorm` package. Or just use NanoStr…
Answer: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
by
James W. MacDonald
62k
Try setting `options(timeout = 5000)`
Answer: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
by
vs2001
▴
40
Apparently, UCSC changed their assembly again. See the discussion on the [Bioconductor/GenomeInfoDB][1] Github page. The solution is explai…
Answer: msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spect
by
thomas.nigel.lawson
•
0
This has been resolved (Windows Firewall issue) - see github issue https://github.com/computational-metabolomics/msPurity/issues/100
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