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Comment: Trying to convert ATACseq annotations of non-model species into human orthologs, by Guido Hooiveld ★ 4.1k

Not an answer to your question, but it seems the content of the column `Entrez ID` are actually no *entrez ids* but rather *aliases*... Ent…

Answer: ChIPpeakAnno can not load data by hukai916 ▴ 10

`ChIPpeakAnno` stores several example files under its `extdata` directory for demonstration purposes. These files can be found with the `sy…

Answer: When doing differential methylation using the sesame package, seems to only go by zhouwanding ▴ 20

Sorry for the late reply. I think the potential confusion comes from KYCG_plotVolcano plots the volcano for enrichment testing statistics, …

Comment: ChIPpeakAnno can not load data by shepherl 4.0k

Where is there a reference to this file? Indeed this file does not exist in this package.

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Guido Hooiveld ★ 4.1k

Thanks James! I indeed missed the obvious... all clear now!

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