Bioconductor #WGCNA

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#WGCNA #tom #integer #REAL #numeric

4.2 years ago • updated 4.1 years ago devbhavin20 • 0

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RNASeqR #hclust #wgcna #dissimilarity #average

updated 4.2 years ago by ATpoint ★ 5.0k • written 4.3 years ago by devbhavin20 • 0

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#NETWORKS #WGCNA @KevinBlighe

4.3 years ago Karthik • 0

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Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Answer: GSEA error by James W. MacDonald 68k

At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k

Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…

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Answer: GSEA error

Answer: OrgDb for maize

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