Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RNASeqR
•
reset
3
votes
4
replies
112
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
7 days ago • updated 6 days ago
hgalmoore
• 0
0
votes
1
reply
78
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 8 days ago by
Gordon Smyth
42k • written 8 days ago by
Rita
• 0
1
vote
5
replies
142
views
while designing matrix i got an error, please help me out
RNASeqR
updated 10 days ago by
Basti
▴ 60 • written 10 days ago by
Rishav
• 0
1
vote
2
replies
93
views
Bioconductor packages for doing tRNA seq analysis
RNASeqR
updated 23 days ago by
Gordon Smyth
42k • written 23 days ago by
Rishav
• 0
1
vote
3
replies
69
views
Need help in doing network analysis using R
RNASeqR
updated 24 days ago by
ATpoint
▴ 570 • written 25 days ago by
Rishav
• 0
1
vote
2
replies
72
views
Error occured in designing a matrix
RNASeqR
updated 25 days ago by
Gordon Smyth
42k • written 25 days ago by
Rishav
• 0
1
vote
2
replies
68
views
I am creating contrast matrix and i am following every procedure but still i don't understand where i am getting error
RNASeqR
25 days ago
Rishav
• 0
1
vote
5
replies
98
views
Error when calculating DE using the classical approach in edgeR
RNASeqR
26 days ago • updated 25 days ago
Rishav
• 0
0
votes
1
reply
113
views
Biological replicates in DESeq2
DESeq2
Bioconductor
RNASeqR
updated 5 weeks ago by
ATpoint
▴ 570 • written 5 weeks ago by
Blanca
• 0
0
votes
3
replies
156
views
How to properly average normalized counts of biological replicates
DESeq2
Normalization
RNASeqR
updated 5 weeks ago by
Michael Love
32k • written 5 weeks ago by
Marina
• 0
0
votes
1
reply
99
views
Using tximport to create the input for DESeq2
RNASeqR
updated 6 weeks ago by
Michael Love
32k • written 6 weeks ago by
ahmesalama
• 0
5
votes
5
replies
159
views
analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
GEO
RNASeqR
Transcriptomics
updated 6 weeks ago by
James W. MacDonald
56k • written 6 weeks ago by
H. Zadeh
• 0
0
votes
2
replies
117
views
TPM data in limma/voom
voom
limma
DifferentialExpression
edgeR
6 weeks ago
RJM
• 0
0
votes
9
replies
383
views
Duplicate correlation with limma in before-after exposure experiment
RNASeqR
updated 3 months ago by
Gordon Smyth
42k • written 4 months ago by
sofie.haglund
• 0
0
votes
1
reply
87
views
Find significant genes related to a specific disease
GeneExpression
RNASeqR
limma
updated 4 months ago by
António Miguel de Jesus Domingues
▴ 480 • written 4 months ago by
Will
• 0
5
votes
6
replies
216
views
WHat is the difference between DEG and TopVarGenes in DESEq2?
DESeq2
R
RNASeqR
4 months ago
ecg1g15
• 0
3
votes
5
replies
202
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 5 months ago by
Kevin Blighe
2.7k • written 5 months ago by
camillab.
▴ 10
17 results • Page
1 of 1
Recent ...
Replies
Answer: Differential Transcript Usage: complex factorial design
by
Gordon Smyth
42k
edgeR does differential expression for transcripts via the catchSalmon function followed the usual edgeR pipelines as you would do for gene…
Comment: RSamtools idxstatsBam not working with remote bam file
by
mja18
▴ 30
Thanks Martin. Yes, that works.
Answer: RSamtools idxstatsBam not working with remote bam file
by
Martin Morgan
25k
Can you tell me if the following works for you? In a new R session ```{r} library(Rsamtools) setMethod(idxstatsBam, "BamFile", …
Comment: Aspli: error with gbCounts
by
achernomoretz
• 0
Hi Jeremy. We got it and we are working on the issue. Thanks for your patience. A
Comment: Aspli: error with gbCounts
by
jbono
• 0
Sorry, I forgot to respond here that I sent the file via email. Please let me know if you didn't receive it, thanks!
Votes
Answer: RSamtools idxstatsBam not working with remote bam file
Running > 100 samples per group - memory issues
R failing to load genome files from EnsDb.Hsapiens.v86
Comment: TCGA data analysis
Comment: BSGenome Forge for non-model organism
Awards
• All
Scholar
to
Aaron Lun
★ 26k
Popular Question
to
Hervé Pagès
14k
Prophet
to
Xianjun Dong
• 0
Scholar
to
Gordon Smyth
42k
Teacher
to
Steve Lianoglou
13k
Locations
• All
West Lafayette,
7 minutes ago
United States,
14 minutes ago
Munich,
18 minutes ago
WEHI, Melbourne, Australia,
20 minutes ago
Germany,
2 hours ago
Traffic: 303 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6