updated 10.7 years ago by
Hervé Pagès
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written 10.8 years ago by
jdavison
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Comment: Heatmap of the Count Matrix
by
ArnulfoByrd
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Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …
Answer: readBam vs read_bam_insert_metrics
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James W. MacDonald
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Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…
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James W. MacDonald
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There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
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Gordon Smyth
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What you describe sounds a good approach to me.
I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…
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by
Michael Love
43k
I moved your post from an "answer" to a "comment".
I don't know about `offst()` function, what is the scale or direction, or whether you a…
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