Bioconductor BioNERO

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plot_expression_profile BioNERO

7 months ago Christopher • 0

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BioNERO

8 months ago matevz.likar • 0

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#BioNERO BioNERO Cystoscope

updated 14 months ago by Fabricio Almeida-Silva ▴ 40 • written 14 months ago by Hasani • 0

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499

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GRN BioNERO

updated 14 months ago by Fabricio Almeida-Silva ▴ 40 • written 15 months ago by majeedaasim • 0

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BioNERO Pviz

16 months ago • updated 14 months ago zxd95 • 0

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BioNERO

updated 19 months ago by Fabricio Almeida-Silva ▴ 40 • written 19 months ago by Biologist • 0

6 results • Page 1 of 1

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Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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