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BioNERO and Cystoscope
#BioNERO BioNERO Cystoscope
updated 8 days ago by ▴ 30 • written 9 days ago by • 0
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Comment: Doubt about expression data as well as assay by ATpoint ★ 2.4k
Should've followed the advise from Slack and add any details, for example a specific dataset.
Comment: Help with Error in DiffBind by Chris • 0
Thanks Rory for your reply! My peak files is .broadPeak, created from nf-core/ATAC. The PeakCallers column is broad.
Comment: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Giulia • 0
Hi Rory, Thank you for your quick reply and advice on the matter. The following are the MAplots for the analysis using the background=TRU…
Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar by ATpoint ★ 2.4k
I asked the same some years back: https://support.bioconductor.org/p/p134551/#p134561
Comment: FlowSOM with unrelated channels by helucro ▴ 70
Could you perhaps comment one why you would want to include non-biological "unrelated" channels such as time and event length for clusterin…
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A: converting ensembl transcript ID to ensemble gene: problem & missing values
Comment: From a ENST to ENSG
Comment: From a ENST to ENSG
Answer: Help with Error in DiffBind
Answer: DiffBind on ATAC seq data
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