Bioconductor BioNERO

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plot_expression_profile BioNERO

6 months ago Christopher • 0

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BioNERO

7 months ago matevz.likar • 0

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#BioNERO BioNERO Cystoscope

updated 13 months ago by Fabricio Almeida-Silva ▴ 40 • written 13 months ago by Hasani • 0

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460

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GRN BioNERO

updated 13 months ago by Fabricio Almeida-Silva ▴ 40 • written 14 months ago by majeedaasim • 0

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BioNERO Pviz

15 months ago • updated 13 months ago zxd95 • 0

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BioNERO

updated 18 months ago by Fabricio Almeida-Silva ▴ 40 • written 18 months ago by Biologist • 0

6 results • Page 1 of 1

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Answer: Error retrieving ensembl gene id using biomaRt... by Mike Smith ★ 6.5k

I think you have the assignment operator (`<-`) the wrong way round. It should be `df_biomrt_tmp <- getBM(...`

Answer: Error retrieving ensembl gene id using biomaRt... by James W. MacDonald 65k

I can't reproduce. ``` > library(biomaRt) Warning message: package 'biomaRt' was built under R version 4.3.2 > library(org.Hs.eg.db…

Comment: DESeq2 setting significant p-value by Michael Love 41k

``` > counts <- matrix(1:16, ncol=4, dimnames=list(letters[1:4],NULL)) > coldata <- data.frame(x=1:4) > DESeqDataSetFromMatrix(counts, cold…

Comment: DESeq filtering specific to contrasts by Michael Love 41k

Right, I was suggesting subsetting as a valid choice for "treatment and control samples at each timepoint"

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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