Showing : Biophysics • reset
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Job: Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
2.3 years ago simonsF.careers • 0
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DEG Calling on Transcripts vs Genes
Biophysics limma Biophysics limma
10.5 years ago Yogesh Saletore ▴ 10
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
11.1 years ago Wang Ming ▴ 20
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
updated 11.1 years ago by ★ 1.2k • written 11.1 years ago by ▴ 20
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
11.3 years ago Pan Du ▴ 440
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R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
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R: R: how to use writeFASTA in modality "append"
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 14.9 years ago by ★ 3.4k • written 14.9 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Biostrings biomaRt miRNA Biophysics Biostrings biomaRt
14.9 years ago mauede@alice.it ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
14.9 years ago michael watson IAH-C ★ 3.4k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 870
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R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics Biophysics
14.9 years ago mauede@alice.it ▴ 870
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SAM warning
Biophysics Alignment Annotation Normalization Cancer hgu133plus2 probe affy vsn MBCB vsn
15.3 years ago elliot harrison ▴ 230
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Filtering before differential expression analysis of microarrays - New paper out
Biophysics Normalization affy vsn Biophysics Normalization affy vsn
15.3 years ago Steve Lianoglou ★ 13k
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Preprocessing affymetrix array data
Biophysics Biophysics
15.6 years ago Abdi Ali ▴ 20
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878
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Bizarre artifacts in MA plots for ChIP-chip data
Microarray Biophysics Microarray Biophysics
updated 15.6 years ago by ★ 2.4k • written 15.6 years ago by ★ 13k
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Help with creating a figure
Biophysics Biophysics
updated 15.9 years ago by ▴ 340 • written 15.9 years ago by ★ 13k
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Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.0 years ago Birgit Hauer ▴ 30
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Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.2 years ago Birgit Hauer ▴ 30
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Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.2 years ago Birgit Hauer ▴ 30
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ReadAffy problems
Genetics Biophysics affy Genetics Biophysics affy
updated 21.0 years ago by ★ 2.3k • written 21.0 years ago by ▴ 30
21 results • Page 1 of 1
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Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
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Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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