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updated 4 months ago by Mike Smith ★ 5.6k • written 4 months ago by Meriem • 0

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Devel Bioconductor Packages BuildReport devel

10 months ago shepherl 3.1k

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biscuiteerData biscuiteer BuildReport

7 weeks ago jacob.morrison • 0

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Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…

Comment: Rsamtools is not available for (for R version 4.0.2) by olinares-perdomo • 0

I had the same problem (R 4.2.0) I used BiocManager::install("Rsamtools", force = TRUE) And it is working fine

Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Gordon Smyth 45k

When I answered your original question, I assumed you would use the simplest possible code ``` Status <- factor(Sample_info$Status) ``` w…

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