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Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by nytwordlehints • 0
Amazing insights! I learned a lot from this.[pokemon overlord][1] [1]: https://pokemonoverlord.com
Answer: Is it still possible to do batch correction for my data? by Gordon Smyth 53k
I agree with the comments from James MacDonald, but I will add that if you use the standard linear model correction for batch ``` design <-…
Answer: specifying refColumn in calcNormFactors() by Gordon Smyth 53k
Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…
Answer: Sex prediction in sesame for EPICV2 by Tim Peters ▴ 230
Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…
Comment: Convergence Issues and Model Selection DESeq2 by dani.guan.3 • 0
Thank you, I appreciate your time and help.
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A: Fundamental questions about DESeq2 and RUVs in targeted gene set of 500
Answer: p-adjusted values in multiple comparisons
Comment: p-adjusted values in multiple comparisons
DiffBind dropping peaks in ATAC-seq data
A: decideTests() options in LIMMA
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