Bioconductor ChipSeq

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ChIPpeakAnno ChIPSeq

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Jerina ▴ 10

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1.0k

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ChIPSeq DiffBind

updated 11 months ago by Rory Stark ★ 5.2k • written 11 months ago by lin.pei26 • 0

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448

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DiffBind chipseq

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by lin.pei26 • 0

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390

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chipseq DifferentialMethylation DESeq2

updated 3 months ago by Michael Love 41k • written 3 months ago by rebw25 • 0

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1.8k

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DiffBind R chipseq

updated 4 months ago by Rory Stark ★ 5.2k • written 6.6 years ago by kyliecode • 0

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174

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bSubControl ChIPSeq DiffBind

3 months ago frueher • 0

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1.2k

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diffbind chipseq

updated 11 months ago by lin.pei26 • 0 • written 4.7 years ago by danielaperry2015 • 0

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330

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csaw ChIPseq DiffBind

5 months ago jared.andrews07 ▴ 30

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3.0k

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DiffBind chipseq

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by ANAMIKA • 0

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284

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ChIPpeakAnno ChIPSeq MotifDiscovery

7 months ago franciscrick41 • 0

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118

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chipseq

updated 16 days ago by James W. MacDonald 65k • written 16 days ago by zhulin • 0

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DiffBind macs2 chipseq

3 hours ago • updated 2 hours ago yvonneh • 0

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167

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ChIPSeq annotation ChIPpeakAnno

12 weeks ago nilanjanamani88 • 0

13 results • Page 1 of 1

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Answer: DESeq2 v1.35.0 by Michael Love 41k

That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k

Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.

Answer: DESeq2 v1.35.0 by James W. MacDonald 65k

Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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