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Comment: nightmare to make custom txdb for genomes from ToxoDB
by
James W. MacDonald
67k
Thanks Hervé! Very helpful. However, I believe that `keepStandardChromosomes` gets called by `gDNAx`, and it appears not to work correctly.…
Answer: nightmare to make custom txdb for genomes from ToxoDB
by
Hervé Pagès
16k
Is this for genome assembly TGA4? https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000006565.2/
If that's the case then:
```
library(t…
Answer: nightmare to make custom txdb for genomes from ToxoDB
by
James W. MacDonald
67k
Your post title is misleading. You have no problem whatsoever generating the `TxDb`, the problem is using it with `gDNAx`, which attempts t…
Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
by
Gordon Smyth
52k
Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…
Comment: Error in get_anno_data(ontology) : ontology not supported yet...
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GODseeker
•
0
thank u so much ,god bless u,my dear friend.
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