Bioconductor ComBat-seq

Showing : ComBat-seq • reset

0

votes

3

replies

959

views

ComBat-seq sva

updated 9 months ago by W. Evan Johnson ▴ 870 • written 9 months ago by schlumbohm • 0

5

votes

2

replies

1.9k

views

sva ComBat ComBat-seq Bioconductor ComBat_seq

16 months ago Federico ▴ 10

2 results • Page 1 of 1

Recent ...

Replies

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Votes

Awards • All

Teacher to Axel Klenk ★ 1.1k