Bioconductor DMRScan

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DMRScan

updated 2.2 years ago by ATpoint ★ 5.0k • written 2.2 years ago by martin.grigorov ▴ 10

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Comment: JunctionSeq producing strangely large effect sizes for certain exon counting bin by 97shandie • 0

That's a tricky issue! I've definitely seen similar behavior in differential exon usage analysis. It sounds like the normalization method J…

Comment: Heat Map by 97shandie • 0

Hi Dania, it looks like you're on the right track building your heatmap! It's great you've already filtered your data based on adjusted p-v…

Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Results with PON give more variants by ejafgdf4.ge.r.m • 0

It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

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Comment: Check removeBatchEffect effectiveness

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