Recent ...
Replies
Comment: featureCounts: 0% successfully assigned fragments
by
KMS
•
0
Sorry for the incomplete information. I have bacterial RNASeq pair end data and using subread/Rsubread on Rstudio and ubuntu, after few sec…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gordon Smyth
45k
No, you have it wrong way around.
If you want deviance explained by x1, then you need
```
R2_x1 <- ( deviance without x1 in model - devia…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gemma
•
0
Many thanks for your answer.
To clarify the last point, `R2_nox1` is the proportion of the deviance explained when considering `design.no…
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
by
Rory Stark
★
4.4k
The latest version, `DiffBind_3.6.1`, contains fixes for these issues. You will get these fixes if you upgrade to `R_4.2.0` and `Bioconduct…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gordon Smyth
45k
The R2 values look completely normal. The median R2 is 10%, which seems somewhat low rather than high. With so many genes, you will natural…
Votes
Awards
• All
Popular Question to
Johannes Rainer
★
1.9k
Popular Question to
Gordon Smyth
45k
Popular Question to
Julie Zhu
★
4.3k
Scholar to
Hervé Pagès
15k
Commentator to
James W. MacDonald
59k
Locations
• All
Wageningen University, Wageningen, the Netherlands, just now
Croatia, just now
Austria, 7 minutes ago
Canada, 9 minutes ago
Switzerland, 21 minutes ago
Wageningen University, Wageningen, the Netherlands, just now
Croatia, just now
Austria, 7 minutes ago
Canada, 9 minutes ago
Switzerland, 21 minutes ago
Traffic: 508 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6