Bioconductor GEO

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GEO affy

5 weeks ago • updated 4 weeks ago Kurtis • 0

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DESeq2 GEO miRNAData

updated 11 months ago by ATpoint ★ 4.1k • written 11 months ago by ashisaanz • 0

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Comment: Problem finding certain variables when importing a public database GSE73103 by Guido Hooiveld ★ 3.9k

FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…

Comment: ChAMP installation issue by shepherl 3.9k

Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…

Answer: Gene set enrichment analysis by Guido Hooiveld ★ 3.9k

No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…

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A: DEXSeq time course design

using variable in design formula

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