Bioconductor GEOmetadb.sqlite

Showing : GEOmetadb.sqlite • reset

1

vote

1

reply

665

views

GEOmetadb GEOmetadb.sqlite dbConnect

updated 14 months ago by James W. MacDonald 67k • written 14 months ago by Lee ▴ 10

1 result • Page 1 of 1

Recent ...

Replies

Comment: Identifying potentially associated gene set to drug response using GSVA by wtao7767 • 0

https://sprunki.net/ Incredibox Sprunki is a creative mod of the classic Incredibox game, blending Sprunki's unique style with interactive …

Answer: Allele frequencies for ALL alleles of one SNP ? by Abiologist • 0

I've discovered that rsnps::ncbi_snp_query(snp_id) does actually give this information - at the bottom of the result$maf_population table. …

Answer: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

Hi, if you want to do some formal inference about the effect of a drug at RNA level, then I would recommend you doing a differential expres…

Answer: How to get The evolutionary conservation scores for lncRNAs by the phastCons100w by Robert Castelo ★ 3.4k

The `phastCons100way.UCSC.hg38` annotation package, storing conservation scores of the human genome version `hg38`, should be queried with …

Comment: Package needs internet access by firestar ▴ 20

That worked! Thanks! I created the genome file locally and uploaded that. I didn't really think that BSgenome.Hsapiens.UCSC.hg38 was only u…

Votes

Answer: Package needs internet access

Dotplot from enricher outputting very few genes

Awards • All

Scholar to James W. MacDonald 67k