Bioconductor GSE62944

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GSE62944 annotationhub differentialexpression

updated 8.5 years ago by Sonali Arora ▴ 390 • written 8.5 years ago by hamda.binte.ajmal • 0

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experimenthub gse62944

updated 8.2 years ago by Valerie Obenchain ★ 6.8k • written 8.2 years ago by shinx558 • 0

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tcga cancer BreastCancer gse62944 luminalA

updated 8.4 years ago by phil.chapman ▴ 150 • written 8.4 years ago by hamda.binte.ajmal • 0

3 results • Page 1 of 1

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Comment: mutational signatures problems by Danyiel • 0

ty for solustion

Answer: Dealing with 0 miRNA counts in DESeq2 analysis and influence in adjusted p-value by Michael Love 42k

This is covered in the workflow (rnaseqGene). You can filter them, but no they will not negatively affect the multiple testing because o…

Comment: When doing differential methylation using the sesame package, seems to only go by ramiro.barrantes ▴ 10

Thank you, the strange thing is that I am only getting positive effect sizes. I [see two relevant definitions][1]: - Eff_* : The effect s…

Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

The odds ratio, not log FC. My bad.

Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

``` testResult$Eff_Condition > 0.1 ```

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Answer: object 'hdac_targets' not found

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