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experimenthub
•
reset
6
votes
12
replies
4.8k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 9 days ago
shepherl
3.8k
0
votes
4
replies
216
views
Storing directories inside an ExperimentHub package?
ExperimentHub
21 days ago • updated 20 days ago
Tim Barry
• 0
0
votes
4
replies
1.4k
views
Cannot connect to ExperimentHub server
ExperimentHub
5 months ago
yanling
• 0
0
votes
1
reply
727
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 13 months ago by
Peter Hickey
▴ 740 • written 13 months ago by
cathalgking
▴ 10
0
votes
3
replies
692
views
Can I create my own, private ExperimentHub instance?
ExperimentHub
21 months ago • updated 20 months ago
sandmann.t
▴ 70
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago
shepherl
3.8k
8
votes
33
replies
3.6k
views
Unable to download hg19.generanges as part of DMRcatedata package
DMRacte
DMRcateranges
ExperimentHub
hg19.generanges
updated 3.3 years ago by
friedmanhiccc
▴ 10 • written 3.6 years ago by
richardallenfriedmanbrooklyn
▴ 20
8
votes
16
replies
6.2k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 3.7 years ago by
shepherl
3.8k • written 3.7 years ago by
enricoferrero
▴ 660
2
votes
2
replies
693
views
ExperimentHub downloading files to home directory (~)
ExperimentHub
updated 5.1 years ago by
shepherl
3.8k • written 5.1 years ago by
story.benjamin
▴ 20
4
votes
10
replies
1.8k
views
Can't access devel version of ExperimentHub in Travis CI
experimenthub
continuous-integration
5.6 years ago
Kyle Johnsen
▴ 30
1
vote
1
reply
731
views
What is the function of the 'make-metadata.R' script when making a ExperimentHub package?
experimenthub
updated 5.7 years ago by
shepherl
3.8k • written 5.7 years ago by
Kyle Johnsen
▴ 30
0
votes
7
replies
2.2k
views
ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
Tim Triche
★ 4.2k
5
votes
4
replies
1.4k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
6.0 years ago
slinker
▴ 20
5
votes
2
replies
1.7k
views
Setting ExperimentHub Cache Location
experimenthub
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
Mike Smith
★ 6.5k
5
votes
11
replies
2.6k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 7.4 years ago by
Levi Waldron
★ 1.1k • written 7.4 years ago by
morganx
▴ 10
5
votes
3
replies
1.5k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 7.4 years ago by
Lucas Schiffer
▴ 240 • written 7.5 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.2k
views
ExperimentHub - Error: database is corrupt
ExperimentHub
7.5 years ago
francois.collin
• 0
4
votes
7
replies
1.6k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 7.7 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
Michael Love
41k
0
votes
2
replies
1.4k
views
Getting "error: database is corrupt" when using ExperimentHub()
experimenthub
gse62944
updated 7.8 years ago by
Valerie Obenchain
★ 6.8k • written 7.8 years ago by
shinx558
• 0
19 results • Page
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Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient
by
JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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