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Answer: lfcShrink and alpha value
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Michael Love
43k
The code I sent just tells summary what threshold to use when printing the table.
Comment: Crossover design with limma
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Marek Gierlinski
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30
Thank you for your answer. It is an interesting solution. I've never though of modifying the design matrix itself - I always try to have a …
Comment: pathview - multiple states
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Guido Hooiveld
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4.1k
According to the the help page of `pathview` (type `?pathview`) the input should be `either vector (single sample) or a matrix-like data (m…
Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
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Aaron Lun
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28k
You can examine the structure of a `DelayedMatrix` by calling the `showtree()` function. For example:
```
library(scRNAseq)
X <- fetchData…
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