Bioconductor HiC-DC+

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HiC-DC+ HiCDCPlus BiocParallel

updated 3.2 years ago by koushik • 0 • written 3.5 years ago by Tay ▴ 10

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HiCDCPlus HiC-DC+ HiCcompare HiC

updated 2.0 years ago by merve.sahn • 0 • written 3.5 years ago by mtS • 0

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665

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HiC-DC+ HiCDCPlus

updated 21 months ago by scott • 0 • written 2.2 years ago by 1037144675 • 0

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461

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HiC-DC+ HiCDCPlus

updated 11 months ago by merve.sahn • 0 • written 17 months ago by Yue • 0

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HiC-DC+ HiCDCPlus

updated 2.0 years ago by merve.sahn • 0 • written 2.8 years ago by Hannah • 0

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Yes, blockLength=200000, and seg=seg. I am concerned about the inter-feature distance of features. I generated this plot for various bloc…

Answer: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k

Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes? I'm wondering if there's a way to characterize these 7 samples. …

Comment: Can I trust the differential expression analysis when the two groups overlap on by BioinfGuru ▴ 30

I think I am about to run into the same issue with my data, so I'll be interested to read peoples opinions on this also i.e. when the group…

Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups by Gordon Smyth 50k

The MDS plot shows that the time points are hugely different and whereas the replicate samples appear very consistent, with very low variat…

Answer: Store output of matchPWM() by mat149 ▴ 70

hitlist<-lapply(irs, FUN = matchPWM, min.score="90%", with.score=TRUE, pwm = pwm) ot <- endoapply(hitlist, function(x) as(x, "IRanges")) …

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Comment: Store output of matchPWM()

Answer: Store output of matchPWM()

Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'

ChipQC 'names' attribute [9] must be the same length as the vector [2]'

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Scholar to mat149 ▴ 70