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HiC
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0
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392
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Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC
HiCDCPlus
written 8 weeks ago by
Chaoability
• 0
0
votes
0
replies
624
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
18 months ago
user_bioinfo
• 0
0
votes
2
replies
875
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 2.2 years ago by
IsMM
• 0
0
votes
0
replies
1.4k
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
3.6 years ago
xubeisi
• 0
0
votes
0
replies
1.5k
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
4.2 years ago
Ankit
▴ 20
0
votes
3
replies
1.4k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 3.8 years ago by
merve.sahn
• 0 • written 5.2 years ago by
mtS
• 0
0
votes
0
replies
990
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
5.3 years ago
changxu.fan
▴ 20
1
vote
7
replies
2.5k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 5.4 years ago by
Aaron Lun
★ 29k • written 5.4 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
1.4k
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 5.8 years ago by
Aaron Lun
★ 29k • written 5.8 years ago by
girardot
• 0
0
votes
1
reply
1.4k
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 6.3 years ago by
Kevin Blighe
★ 4.0k • written 6.4 years ago by
c.chakraborty
• 0
0
votes
3
replies
2.2k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 7.1 years ago by
bioparticles.melly
• 0 • written 7.1 years ago by
m.t.lorenc
• 0
0
votes
9
replies
2.5k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 7.2 years ago by
Aaron Lun
★ 29k • written 7.2 years ago by
mictadlo
▴ 10
0
votes
1
reply
1.4k
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
7.2 years ago
mictadlo
▴ 10
1
vote
1
reply
2.2k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 7.5 years ago by
Aaron Lun
★ 29k • written 7.5 years ago by
gryderart
• 0
2
votes
1
reply
1.8k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 8.3 years ago by
Aaron Lun
★ 29k • written 8.3 years ago by
hwick1
▴ 20
0
votes
8
replies
2.5k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 8.3 years ago by
Aaron Lun
★ 29k • written 8.3 years ago by
hwick1
▴ 20
2
votes
2
replies
2.1k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
8.5 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
2.1k
views
GOTHiC hg19 error
GOTHiC
hic
10.4 years ago
Nathan Sheffield
▴ 20
4
votes
20
replies
3.7k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
10.4 years ago
Bogdan
▴ 670
19 results • Page
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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics
by
mudasarnaeem2020
• 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error
by
a2sahaaaq2c
• 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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