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HiC
•
reset
0
votes
2
replies
378
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 7 months ago by
IsMM
• 0
0
votes
0
replies
894
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
2.1 years ago
xubeisi
• 0
0
votes
0
replies
902
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.7 years ago
Ankit
▴ 20
0
votes
3
replies
904
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 2.2 years ago by
merve.sahn
• 0 • written 3.7 years ago by
mtS
• 0
0
votes
0
replies
602
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
3.8 years ago
changxu.fan
▴ 20
1
vote
7
replies
1.7k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
907
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 4.2 years ago by
Aaron Lun
★ 28k • written 4.2 years ago by
girardot
• 0
0
votes
1
reply
927
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
c.chakraborty
• 0
0
votes
3
replies
1.6k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 5.5 years ago by
bioparticles.melly
• 0 • written 5.5 years ago by
m.t.lorenc
• 0
0
votes
9
replies
1.6k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
mictadlo
▴ 10
0
votes
1
reply
964
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.6 years ago
mictadlo
▴ 10
1
vote
1
reply
1.5k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
gryderart
• 0
2
votes
1
reply
1.3k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
hwick1
▴ 20
0
votes
8
replies
1.7k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
hwick1
▴ 20
2
votes
2
replies
1.5k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
7.0 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
1.7k
views
GOTHiC hg19 error
GOTHiC
hic
8.9 years ago • updated 8.8 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
2.6k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.9 years ago
Bogdan
▴ 670
17 results • Page
1 of 1
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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42k
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