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Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6 by Rory Stark ★ 4.3k
That is correct.
Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6 by Sam ▴ 10
So I understand that the warning was actually of no importance and could be ignored ?
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by Michael Love 35k
In DESeq2, if you have housekeeping genes, you should provide these as `controlGenes` to `estimateSizeFactors()`. `DESeq()` runs this funct…
Comment: Trying to follow a gene set analyisis in R by Michael Love 35k
What do you get for `design` after running `design = model.matrix(~ es$condition)`
Comment: How to use subjunc for differential splicing analysis? by Assa Yeroslaviz ★ 1.5k
thanks again. so How do I get the exon counts? This is the command I use now? ``` subjunc -T 10 -i $subjuncIndex/Cel.WBcel235 -r $rawdat…
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Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
Answer: How to use subjunc for differential splicing analysis?
Answer: catchKallisto results are not counts
Answer: catchKallisto results are not counts
A: What does the relative-log expression normalization mean in the deseq2 wrapper f
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