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updated 5.4 years ago by
Martin Morgan
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written 5.4 years ago by
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6.1 years ago
royce.wilkinson
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Answer: DiffBind - question on the use of filtered or unfiltered input data
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apkffh4x
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Yes, you can use HR peaks as input to DiffBind, especially if your goal is high-confidence differential binding, but using all peaks provid…
Answer: Log2foldchange strange behavior
by
ATpoint
★
4.8k
The `results()` output you show is perfectly in line with the oputput of `plotCounts()`, hence it is not a DESeq2 issue. UBE3A is higher in…
Comment: DeSeq Strategies for run to run Replication
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i.c.denhond
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Dear Michael,
could you please comment on how to properly apply a vst transformation to a new dataset (in this case, left-out samples)? I …
Comment: Log2foldchange strange behavior
by
RambakKulit
•
0
Okay, I'm attaching those now. Just to provide a bit more context for the results below: I downloaded both count and TPM data from the GTEx…
Comment: Log2foldchange strange behavior
by
ATpoint
★
4.8k
This cannot be answered here like this. Your results tables are not direct DESeq2 output, maybe it's a merging error during generation of t…
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