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DESeq2 ESTIMATE RNASeqData MCPcounter

updated 7 days ago by Michael Love 42k • written 9 days ago by Aleksandra • 0

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Comment: limma technical repeat correction by Gordon Smyth 51k

I strongly discourage the use of logFC cutoffs, especially larger cutoffs. There is no scientific or statistical justification for arbitrar…

Comment: SingleR Label.Ont by Leslie • 0

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Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

An LRT has nothing to do with any contrast, but instead is comparing the model fit with and without certain coefficients. So if you do ``…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi, Unfortunately, I don't know anyone who could help me with this particular question. Would calling the results() function with a cont…

Comment: limma technical repeat correction by john • 0

Hi @gordonsmyth, Thank you very much for the clarification, including the details about lmer() and for confirming that the original analysi…

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Comment: limma technical repeat correction

Comment: Analysis of 2*4 factorial design

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