Bioconductor MEDIPS

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BSgenome BSgenome genomes MEDIPS BSgenome BSgenome genomes MEDIPS

updated 13.2 years ago by Kasper Daniel Hansen ★ 6.5k • written 13.2 years ago by Guest User ★ 13k

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Sequencing MEDIPS Sequencing MEDIPS

updated 13.8 years ago by Oscar Rueda ▴ 40 • written 13.8 years ago by Guest User ★ 13k

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896

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genomes MEDIPS genomes MEDIPS

updated 13.8 years ago by Valerie Obenchain ★ 6.8k • written 13.8 years ago by Vining, Kelly ▴ 220

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989

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MEDIPS MEDIPS

updated 14.0 years ago by Joern Dietrich ▴ 10 • written 14.0 years ago by Elisabetta Manduchi ▴ 160

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1.1k

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BSgenome BSgenome MEDIPS BSgenome BSgenome MEDIPS

15.0 years ago Nora ▴ 20

105 results • Page 3 of 3

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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