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Comment: MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repositor
by
Laurent Gatto
1.5k
Yes, indeed, if you have local files, you can provide their full path as input to the `openMSfile()` function. This is also what happens in…
Comment: MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repositor
by
gianluigi.caltabiano
•
0
Hello, I have the same exact problem.
I am doing a tutorial about Quantitative Proteomics using rpx to import data an PXDataset keep givin…
Comment: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★
3.2k
Part 2; continuation of Part 1 above...
> # !! got same error as reported !!
>
> # ... but do these 150 LOCs have a GO annotat…
Comment: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★
3.2k
I had a closer look at this, and the error you got is actually somewhat misleading; it is not that you are using the wrong ids (ids that ar…
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
by
vanbelj
▴
10
Below is a [solution][1] to extract and average counts across replicates from a dds using Base R. If you're familiar with ```limma``` you …
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