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Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
andrebolerbarros
▴
10
Upgrading the package solved the issue, thanks!
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
ATpoint
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1.2k
The error comes from the `mixsqp` package, see https://github.com/stephens999/ashr/issues/131. Upgrading the package to the most recent 0.3…
Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
andrebolerbarros
▴
10
Thanks for the suggestion.
I ran the following filtering criteria:
```
keep <- rowSums(counts(dds) >= 10) >= 5
dds <- dds[keep,]
```
It ga…
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
tom.kloter
•
0
Hi,
I updated R, RStudio as well as the packages and now everything is working neatly! Thank you so much for your contributions to my prob…
Answer: How to run GSVA with partially NA genes
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Robert Castelo
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2.8k
hi,
a warning is not an error and this particular warning says that genes with constant expression values are discarded from calculation…
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