7.6 years ago
floriandeckert
▴
30
6
votes
11
replies
4.2k
views
Recent ...
Replies
Answer: readBam vs read_bam_insert_metrics
by
James W. MacDonald
68k
Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…
Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
by
James W. MacDonald
68k
There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
What you describe sounds a good approach to me.
I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
by
Michael Love
43k
I moved your post from an "answer" to a "comment".
I don't know about `offst()` function, what is the scale or direction, or whether you a…
Comment: Average biological replicates in RNA-seq
by
boczniak767
▴
740
@atpoint Should I first standardise data and then average replicates?
Awards
• All
Popular Question to
rtrivedi1
▴
10
Popular Question to
Assa Yeroslaviz
★
1.5k
Popular Question to
Nik dAK
▴
10
Popular Question to
Michael
•
0
Locations
• All
United States, 47 minutes ago
The city by the bay, 52 minutes ago
WEHI, Melbourne, Australia, 54 minutes ago
San Diego, 2 hours ago
United States, 2 hours ago
United States, 47 minutes ago
The city by the bay, 52 minutes ago
WEHI, Melbourne, Australia, 54 minutes ago
San Diego, 2 hours ago
United States, 2 hours ago
Traffic: 385 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6