Showing : RnaSeq • reset
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Question about quality of biological replicates when using edgeR
RNASeq edgeR RNASeq edgeR
12.4 years ago sheng zhao ▴ 90
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12
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3.0k
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RNAseq machine learning classifier
RNASeq Microarray RNASeq Microarray
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 380
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3
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1.4k
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input format for Mfuzz clustering
RNASeq RNASeq
12.4 years ago Fix Ace ▴ 100
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2
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2.4k
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DESeq. Error message on estimateDispersions blind
RNASeq DESeq RNASeq DESeq
updated 12.4 years ago by ★ 3.8k • written 12.4 years ago by ▴ 20
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5
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2.6k
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voom
RNASeq RNASeq
12.4 years ago Ina Hoeschele ▴ 620
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960
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Can we apply WGCNA to RNA-seq dataset?
RNASeq Clustering RNASeq Clustering
12.4 years ago faranak ▴ 10
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2
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1.9k
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limma: tissue specific genes using voom
RNASeq limma edgeR RNASeq limma edgeR
updated 12.4 years ago by 53k • written 12.4 years ago by ▴ 30
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4
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6.1k
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edgeR - ANOVA-like test for differential gene expression
RNASeq edgeR RNASeq edgeR
12.4 years ago Benedikt Drosse ▴ 30
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1
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1.4k
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edgeR outlier question for version 3.0.8
RNASeq GO edgeR RNASeq GO edgeR
updated 12.4 years ago by 53k • written 12.4 years ago by ▴ 340
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2
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2.3k
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Small RNA seq data analysis using DESeq
RNASeq DESeq RNASeq DESeq
updated 12.4 years ago by ★ 3.8k • written 12.4 years ago by ▴ 20
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2
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2.4k
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Multi-factor multi-level analysis of RNAseq data
RNASeq edgeR RNASeq edgeR
updated 12.5 years ago by ▴ 300 • written 12.5 years ago by ★ 13k
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10
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3.1k
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DESeq /edgeR design problem for a small RNASeq
RNASeq edgeR DESeq RNASeq edgeR DESeq
updated 12.5 years ago by 53k • written 12.5 years ago by ▴ 90
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2
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1.7k
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Problems with edgeR package
RNASeq edgeR RNASeq edgeR
updated 12.5 years ago by ▴ 880 • written 12.5 years ago by ▴ 90
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method or package to detect genes expressed in a specific tissue comparing to other tissues
RNASeq Microarray RNASeq Microarray
12.5 years ago shirley zhang ★ 1.0k
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RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq edgeR Rsubread Sequencing RNASeq edgeR Rsubread
12.5 years ago Gordon Smyth 53k
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17
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3.8k
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[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ▴ 330
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1
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1.3k
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edgeR: Using ratios (translational efficiencies) as input
RNASeq GO Cancer limma edgeR RNASeq GO Cancer limma edgeR
updated 12.6 years ago by ▴ 210 • written 12.6 years ago by ▴ 80
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1.4k
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edgeR: Using ratios (translational efficiencies) as input
RNASeq GO limma edgeR RNASeq GO limma edgeR
12.6 years ago Gordon Smyth 53k
1
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2
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1.9k
views
edgeR: Using ratios (translational efficiencies) as input
RNASeq edgeR RNASeq edgeR
updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 210
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1.1k
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edgeR: Using ratios (translational efficiencies) as input
RNASeq limma edgeR RNASeq limma edgeR
12.6 years ago Alvaro J. González ▴ 80
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837
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edgeR : Include or exclude structural/noncoding RNA reads in the analysis
RNASeq edgeR RNASeq edgeR
12.6 years ago Gordon Smyth 53k
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0
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969
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edgeR : Include or exclude structural/noncoding RNA reads in the analysis
RNASeq edgeR RNASeq edgeR
12.6 years ago gowtham ▴ 210
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4
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1.8k
views
EdgeR multi-factor design questions
RNASeq edgeR RNASeq edgeR
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 30
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1
reply
4.8k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ▴ 330
1
vote
2
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3.0k
views
Annotation problem through org.Mm.eg.db
RNASeq RNASeq
updated 12.7 years ago by ★ 7.2k • written 12.7 years ago by ▴ 180
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2
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1.8k
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Difference between EdgeR and DeSeq in library normalization
RNASeq Normalization edgeR DESeq RNASeq Normalization edgeR DESeq
updated 12.7 years ago by ★ 3.8k • written 12.7 years ago by ▴ 330
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2.5k
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Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.7 years ago Matthew Thornton ▴ 390
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3
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2.1k
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QuasiSeq vs DSS
RNASeq Cancer edgeR DSS RNASeq Cancer edgeR DSS
updated 12.7 years ago by ★ 7.9k • written 12.7 years ago by ★ 2.0k
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10
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3.5k
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edgeR design matrix and contrast questions
RNASeq Normalization edgeR RNASeq Normalization edgeR
updated 12.7 years ago by 53k • written 12.7 years ago by ▴ 40
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1.3k
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Question: type of NOISeq package input file
RNASeq NOISeq RNASeq NOISeq
12.7 years ago Guest User ★ 13k
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1.4k
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BitSeq: Required input for 3' bias correction on transcripts.
Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq
12.8 years ago Peter Glaus ▴ 70
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1.3k
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BitSeq: Required input for 3' bias correction on transcripts.
RNASeq safe BitSeq RNASeq safe BitSeq
12.8 years ago Dave Gerrard ▴ 40
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1
reply
1.3k
views
BitSeq: Required input for 3' bias correction on transcripts.
RNASeq BitSeq RNASeq BitSeq
updated 12.8 years ago by ▴ 70 • written 12.8 years ago by ▴ 40
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3
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3.3k
views
[GSVA] Segfault with GSVA
RNASeq Microarray Annotation gcrma convert GSVA RNASeq Microarray Annotation gcrma GSVA
updated 12.9 years ago by ▴ 230 • written 12.9 years ago by ★ 3.4k
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0
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1.9k
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Error message with transcriptCounts(easyRNASeq) performed with gtf file generated with cuffmerge
RNASeq Annotation Normalization Cancer Organism BSgenome BSgenome easyRNASeq RNASeq
12.9 years ago Richard Friedman ★ 2.0k
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7
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2.9k
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Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks
RNASeq Annotation Cancer edgeR cqn easyRNASeq RNASeq Annotation Cancer edgeR cqn
updated 13.0 years ago by ★ 1.2k • written 13.0 years ago by ★ 2.0k
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987
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paired time series data with two conditions
RNASeq RNASeq
13.0 years ago Simon Knott ▴ 20
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2
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1.6k
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error message with easyRNASeq use case
RNASeq Cancer Organism easyRNASeq RNASeq Cancer Organism easyRNASeq
updated 13.0 years ago by 68k • written 13.0 years ago by ★ 2.0k
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0
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851
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discrepancy between gene models in easyRNASeq and provided exon annotation
RNASeq Annotation Organism BSgenome BSgenome RNASeq Annotation Organism BSgenome BSgenome
13.0 years ago Guest User ★ 13k
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0
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1.6k
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get synthetic exon dataset with easyRNASeq
RNASeq Alignment Annotation Normalization GO PROcess GenomicRanges DEXSeq easyRNASeq GO
13.0 years ago delhomme@embl.de ★ 1.2k
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1
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1.6k
views
error in easyRNASeq
RNASeq BSgenome BSgenome easyRNASeq RNASeq BSgenome BSgenome easyRNASeq
updated 13.0 years ago by ★ 1.2k • written 13.0 years ago by ▴ 510
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1
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1.1k
views
EdgeR :column sums of counts or library size?
RNASeq RNASeq
updated 13.0 years ago by ▴ 880 • written 13.1 years ago by ★ 13k
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5
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2.3k
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EdgeR: paired samples together with independant samples
RNASeq edgeR RNASeq edgeR
updated 20 months ago by 53k • written 13.1 years ago by ▴ 30
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0
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1.4k
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Removing overlapping genes from annotation for RNAseq read count
RNASeq Annotation PROcess DESeq RNASeq Annotation PROcess DESeq
13.1 years ago Guest User ★ 13k
0
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1
reply
1.4k
views
EdgeR: paired samples together with independant samples
RNASeq edgeR RNASeq edgeR
updated 13.1 years ago by 53k • written 13.1 years ago by ★ 13k
0
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2
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1.2k
views
experiment design in EdgeR
RNASeq edgeR RNASeq edgeR
updated 13.1 years ago by 53k • written 13.1 years ago by ★ 13k
0
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0
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1.2k
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get synthetic exon dataset with easyRNASeq
RNASeq Annotation Normalization GO PROcess easyRNASeq RNASeq Annotation Normalization GO
13.1 years ago delhomme@embl.de ★ 1.2k
0
votes
1
reply
3.8k
views
mixed-effects analysis within DEseq
RNASeq DESeq RNASeq DESeq
updated 13.1 years ago by ▴ 150 • written 13.1 years ago by ▴ 10
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4
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1.8k
views
DESeq diagnostics
RNASeq Normalization DESeq RNASeq Normalization DESeq
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 100
0
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1
reply
2.9k
views
plotPCA error
RNASeq DESeq RNASeq DESeq
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ★ 13k
1,410 results • Page 27 of 29
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The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …
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Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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