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PhenoGeneRanker BSgenome.Osativa.MSU.MSU7 mouse.db0 SIM
11 months ago Abu 0
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parsing discrete colors in pathview KEGG
SIM pathview SIM pathview
11.9 years ago Luo Weijun ★ 1.6k
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Farms/Call.INI using oligo package?
probe affy oligo SIM farms probe affy oligo SIM farms
12.2 years ago Djork Clevert ▴ 210
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Pathview for global and overview maps Re: using pathview about hsa01100
Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview
updated 12.4 years ago by ▴ 230 • written 12.4 years ago by ★ 1.6k
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SNP6.0 annotation
SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM
13.2 years ago Guest User ★ 13k
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KEGGgraph bug
Pathways Organism SIM KEGGgraph Pathways Organism SIM KEGGgraph
updated 16.1 years ago by ★ 7.2k • written 16.1 years ago by ▴ 270
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installation of Rgraphviz
Rgraphviz SIM Rgraphviz SIM
updated 16.7 years ago by ★ 1.6k • written 16.7 years ago by ▴ 130
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FW: Graphviz in Vista64
Rgraphviz SIM Rgraphviz SIM
updated 16.9 years ago by 25k • written 16.9 years ago by ▴ 350
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Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
17.6 years ago Mark Cowley ▴ 400
9 results • Page 1 of 1
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Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results by sup0903 • 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Votes
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
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