Bioconductor SIM

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PhenoGeneRanker BSgenome.Osativa.MSU.MSU7 mouse.db0 SIM

11 months ago Abu 0

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SIM pathview SIM pathview

11.9 years ago Luo Weijun ★ 1.6k

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probe affy oligo SIM farms probe affy oligo SIM farms

12.2 years ago Djork Clevert ▴ 210

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Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview

updated 12.4 years ago by Ed ▴ 230 • written 12.4 years ago by Luo Weijun ★ 1.6k

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SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM

13.2 years ago Guest User ★ 13k

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1.9k

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Pathways Organism SIM KEGGgraph Pathways Organism SIM KEGGgraph

updated 16.1 years ago by Marc Carlson ★ 7.2k • written 16.1 years ago by Fraser Sim ▴ 270

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Rgraphviz SIM Rgraphviz SIM

updated 16.7 years ago by Patrick Aboyoun ★ 1.6k • written 16.7 years ago by ravi ▴ 130

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Rgraphviz SIM Rgraphviz SIM

updated 16.9 years ago by Martin Morgan 25k • written 16.9 years ago by Sim, Fraser ▴ 350

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genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring

17.6 years ago Mark Cowley ▴ 400

9 results • Page 1 of 1

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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