Showing : SMART-seq • reset
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Can I run DESeq2 with SMART-Seq data
DESeq2 SMART-seq
20 months ago Assa Yeroslaviz ★ 1.5k
5
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Full length single-cell RNA-seq - tximport output for downstream analysis
tximport Seurat Smart-Seq Smart-Seq2
updated 4.4 years ago by 43k • written 4.4 years ago by ▴ 40
2 results • Page 1 of 1
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Comment: Crossover design with limma by wiyol10129 • 0
Friends. I want to share with you what helped me change my life. I never skimp on my health and try to turn only to professionals. [https:/…
Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.
Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k
Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.
Comment: Differential Expression Genes as Independent Variables by abadgerw • 0
The data that is repeated is a quantitative metric of post-mortem pathology across multiple sections. Not all patients have the same number…
Answer: Crossover design with limma by Gordon Smyth 52k
Your experiment is somewhat more elaborate than a classical crossover design because of the period-specific baseline controls. The analyses…
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Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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