updated 4.7 years ago by
daniel.vantwisk
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written 4.8 years ago by
marc.tormo
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Answer: Differential variability modelling with vst() expression
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Gordon Smyth
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Phipson, B., Oshlack, A. DiffVar: a new method for detecting differential variability with application to methylation in cancer and …
Answer: Differential variability modelling with vst() expression
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Michael Love
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Looking at differential variance across groups, where you regress out orthogonal nuisance factors from VST data, seems correct and would po…
Answer: Installation error for Rsamtools.
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James W. MacDonald
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It's already installed. Note the warning:
```
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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
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Nicholas
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Just an update on this: I tried ```tximport``` with ```tx2gene``` objects from the three annotation packages and from the GTF file itself. …
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
by
Nicholas
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Got it, so using the GTF directly rather than any of the annotation packages will yield more accurate results than any of the packages? I g…
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