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Tximeta
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1
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AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta
AnnotationHub
AnnotationHubData
7 months ago
Thon
• 0
1
vote
3
replies
822
views
collapseReplicates error after tximeta
fishpond
tximeta
DESeq2
updated 7 months ago by
Michael Love
42k • written 15 months ago by
Rihards Saksis
• 0
1
vote
2
replies
562
views
tximeta error with vroom
tximeta
vroom
7 months ago
Pufall, Miles A
▴ 30
0
votes
1
reply
649
views
tximeta errors: couldn't find matching transcriptome, returning non-ranged SummarizedExperiment AND unable to find an inherited method for function '…
tximeta
updated 6 months ago by
Michael Love
42k • written 6 months ago by
kyliecode
• 0
0
votes
2
replies
301
views
Which fasta files to use for tximeta makeLinkTxome
tximeta
DESeq2
4 months ago • updated 3 months ago
JING
• 0
5 results • Page
1 of 1
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Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq?
by
baptiste.bidon
• 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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