Showing : acme • reset
0
votes
0
replies
1.2k
views
using Ringo and ACME package for NimbleGen MeDIP-chip data
Ringo ACME Ringo ACME
14.7 years ago Adeolu Adewoye ▴ 40
0
votes
3
replies
1.6k
views
Tiling array analysis, ACME problem
Annotation ACME Annotation ACME
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 70
0
votes
0
replies
1.1k
views
questions regarding ACME
ACME ACME
16.6 years ago Sean Davis 21k
0
votes
2
replies
1.6k
views
understanding ACME
Annotation Cancer ACME Annotation Cancer ACME
updated 18.0 years ago by 21k • written 18.0 years ago by ★ 1.1k
4 results • Page 1 of 1
Recent ...
Replies
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Awards • All
Popular Question to Stephanie M. Gogarten ▴ 890
Autobiographer to Frances Turner ▴ 20
Popular Question to maltethodberg ▴ 180
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
United States, 17 minutes ago
United States, 22 minutes ago
United States, 29 minutes ago
WEHI, Melbourne, Australia, 33 minutes ago
United States, 35 minutes ago
Traffic: 949 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6