6.2 years ago
abrsoule
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updated 8.1 years ago by
Johannes Rainer
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written 8.1 years ago by
bhgyu
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Comment: Large logFC but somewhat high FDR
by
JKim
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0
Thank you very much for taking the time to leave a reply. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
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10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be:
```
hist(fit2$p.value[,"KO_vs_WT"])
```
Answer: p.adjust BH Question
by
Gordon Smyth
53k
Duplicate of https://support.bioconductor.org/p/41077/
Answer: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
Glad you're getting good use out of the package.
The results that you show seem pretty much as one would expect, with nothing surprising. …
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