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Comment: Check removeBatchEffect effectiveness
by
ATpoint
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4.8k
> insert size, mean GC, etc...
This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness
by
Gordon Smyth
52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Comment: Intepretation of results
by
Tom
•
0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
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Tom
•
0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
•
0
Same issue here as well.
This is very weird because I never had this issue before.
I started observing this issue with a new ATAC-seq da…
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